Yamaguchi R - Search Results

1

An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data.

Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T. Hasegawa T, et al. Among authors: yamaguchi r. J Comput Biol. 2014 Nov;21(11):785-98. doi: 10.1089/cmb.2014.0171. Epub 2014 Sep 22. J Comput Biol. 2014. PMID: 25244077 Free PMC article.

2

Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data.

Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T. Nagasaki M, et al. Among authors: yamaguchi r. Genome Inform. 2006;17(1):46-61. Genome Inform. 2006. PMID: 17503355

3

Modeling gene expression regulatory networks with the sparse vector autoregressive model.

Fujita A, Sato JR, Garay-Malpartida HM, Yamaguchi R, Miyano S, Sogayar MC, Ferreira CE. Fujita A, et al. Among authors: yamaguchi r. BMC Syst Biol. 2007 Aug 30;1:39. doi: 10.1186/1752-0509-1-39. BMC Syst Biol. 2007. PMID: 17761000 Free PMC article.

4

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.

Hirose O, Yoshida R, Imoto S, Yamaguchi R, Higuchi T, Charnock-Jones DS, Print C, Miyano S. Hirose O, et al. Among authors: yamaguchi r. Bioinformatics. 2008 Apr 1;24(7):932-42. doi: 10.1093/bioinformatics/btm639. Epub 2008 Feb 21. Bioinformatics. 2008. PMID: 18292116

5

Identification of activated transcription factors from microarray gene expression data of Kampo medicine-treated mice.

Yamaguchi R, Yamamoto M, Imoto S, Nagasaki M, Yoshida R, Tsuiji K, Ishige A, Asou H, Watanabe K, Miyano S. Yamaguchi R, et al. Genome Inform. 2007;18:119-29. Genome Inform. 2007. PMID: 18546480

6

Clustering samples characterized by time course gene expression profiles using the mixture of state space models.

Hirose O, Yoshida R, Yamaguchi R, Imoto S, Higuchi T, Miyano S. Hirose O, et al. Among authors: yamaguchi r. Genome Inform. 2007;18:258-66. Genome Inform. 2007. PMID: 18546493

7

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Shimamura T, Imoto S, Yamaguchi R, Miyano S. Shimamura T, et al. Among authors: yamaguchi r. Genome Inform. 2007;19:142-53. Genome Inform. 2007. PMID: 18546512

8

Bayesian learning of biological pathways on genomic data assimilation.

Yoshida R, Nagasaki M, Yamaguchi R, Imoto S, Miyano S, Higuchi T. Yoshida R, et al. Among authors: yamaguchi r. Bioinformatics. 2008 Nov 15;24(22):2592-601. doi: 10.1093/bioinformatics/btn483. Epub 2008 Sep 25. Bioinformatics. 2008. PMID: 18818216

9

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates.

Fujita A, Gomes LR, Sato JR, Yamaguchi R, Thomaz CE, Sogayar MC, Miyano S. Fujita A, et al. Among authors: yamaguchi r. BMC Syst Biol. 2008 Dec 5;2:106. doi: 10.1186/1752-0509-2-106. BMC Syst Biol. 2008. PMID: 19055846 Free PMC article.

10

Orengedokuto and berberine improve indomethacin-induced small intestinal injury via adenosine.

Watanabe-Fukuda Y, Yamamoto M, Miura N, Fukutake M, Ishige A, Yamaguchi R, Nagasaki M, Saito A, Imoto S, Miyano S, Takeda J, Watanabe K. Watanabe-Fukuda Y, et al. Among authors: yamaguchi r. J Gastroenterol. 2009;44(5):380-9. doi: 10.1007/s00535-009-0005-2. Epub 2009 Mar 25. J Gastroenterol. 2009. PMID: 19319464

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