Mori T - Search Results

1

An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data.

Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T. Hasegawa T, et al. Among authors: mori t. J Comput Biol. 2014 Nov;21(11):785-98. doi: 10.1089/cmb.2014.0171. Epub 2014 Sep 22. J Comput Biol. 2014. PMID: 25244077 Free PMC article.

2

A clique-based method using dynamic programming for computing edit distance between unordered trees.

Mori T, Tamura T, Fukagawa D, Takasu A, Tomita E, Akutsu T. Mori T, et al. J Comput Biol. 2012 Oct;19(10):1089-104. doi: 10.1089/cmb.2012.0133. J Comput Biol. 2012. PMID: 23057820 Free PMC article.

3

Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks.

Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T. Hasegawa T, et al. Among authors: mori t. BMC Syst Biol. 2015 Mar 13;9:14. doi: 10.1186/s12918-015-0154-2. BMC Syst Biol. 2015. PMID: 25890175 Free PMC article.

4

Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks.

Mori T, Flöttmann M, Krantz M, Akutsu T, Klipp E. Mori T, et al. BMC Syst Biol. 2015 Aug 11;9:45. doi: 10.1186/s12918-015-0193-8. BMC Syst Biol. 2015. PMID: 26259567 Free PMC article.

5

Exact Identification of the Structure of a Probabilistic Boolean Network from Samples.

Cheng X, Mori T, Qiu Y, Ching WK, Akutsu T. Cheng X, et al. Among authors: mori t. IEEE/ACM Trans Comput Biol Bioinform. 2016 Nov-Dec;13(6):1107-1116. doi: 10.1109/TCBB.2015.2505310. Epub 2015 Dec 3. IEEE/ACM Trans Comput Biol Bioinform. 2016. PMID: 26661790 Free article.

6

An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data.

Kato Y, Mori T, Sato K, Maegawa S, Hosokawa H, Akutsu T. Kato Y, et al. Among authors: mori t. Bioinformatics. 2017 Jan 15;33(2):202-209. doi: 10.1093/bioinformatics/btw603. Epub 2016 Sep 23. Bioinformatics. 2017. PMID: 27663495

7

Comparison of Pseudoknotted RNA Secondary Structures by Topological Centroid Identification and Tree Edit Distance.

Wang F, Akutsu T, Mori T. Wang F, et al. Among authors: mori t. J Comput Biol. 2020 Sep;27(9):1443-1451. doi: 10.1089/cmb.2019.0512. Epub 2020 Feb 14. J Comput Biol. 2020. PMID: 32058802

8

Identification of periodic attractors in Boolean networks using a priori information.

Münzner U, Mori T, Krantz M, Klipp E, Akutsu T. Münzner U, et al. Among authors: mori t. PLoS Comput Biol. 2022 Jan 14;18(1):e1009702. doi: 10.1371/journal.pcbi.1009702. eCollection 2022 Jan. PLoS Comput Biol. 2022. PMID: 35030172 Free PMC article.

9

Attractor detection and enumeration algorithms for Boolean networks.

Mori T, Akutsu T. Mori T, et al. Comput Struct Biotechnol J. 2022 May 21;20:2512-2520. doi: 10.1016/j.csbj.2022.05.027. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35685366 Free PMC article. Review.

10

Metrics for RNA Secondary Structure Comparison.

Wang F, Akutsu T, Mori T. Wang F, et al. Among authors: mori t. Methods Mol Biol. 2023;2586:79-88. doi: 10.1007/978-1-0716-2768-6_5. Methods Mol Biol. 2023. PMID: 36705899

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