Plaisier CL - Search Results

1

A high-resolution network model for global gene regulation in Mycobacterium tuberculosis.

Peterson EJ, Reiss DJ, Turkarslan S, Minch KJ, Rustad T, Plaisier CL, Longabaugh WJ, Sherman DR, Baliga NS. Peterson EJ, et al. Among authors: plaisier cl. Nucleic Acids Res. 2014 Oct;42(18):11291-303. doi: 10.1093/nar/gku777. Epub 2014 Sep 17. Nucleic Acids Res. 2014. PMID: 25232098 Free PMC article.

2

miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling.

Plaisier CL, Bare JC, Baliga NS. Plaisier CL, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W125-31. doi: 10.1093/nar/gkr374. Epub 2011 May 20. Nucleic Acids Res. 2011. PMID: 21602264 Free PMC article.

3

A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers.

Plaisier CL, Pan M, Baliga NS. Plaisier CL, et al. Genome Res. 2012 Nov;22(11):2302-14. doi: 10.1101/gr.133991.111. Epub 2012 Jun 28. Genome Res. 2012. PMID: 22745231 Free PMC article.

4

A system-level model for the microbial regulatory genome.

Brooks AN, Reiss DJ, Allard A, Wu WJ, Salvanha DM, Plaisier CL, Chandrasekaran S, Pan M, Kaur A, Baliga NS. Brooks AN, et al. Among authors: plaisier cl. Mol Syst Biol. 2014 Jul 15;10(7):740. doi: 10.15252/msb.20145160. Mol Syst Biol. 2014. PMID: 25028489 Free PMC article.

5

Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers.

Ashworth J, Bernard B, Reynolds S, Plaisier CL, Shmulevich I, Baliga NS. Ashworth J, et al. Among authors: plaisier cl. Nucleic Acids Res. 2014 Dec 1;42(21):12973-83. doi: 10.1093/nar/gku1031. Epub 2014 Nov 5. Nucleic Acids Res. 2014. PMID: 25378323 Free PMC article.

6

cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism.

Reiss DJ, Plaisier CL, Wu WJ, Baliga NS. Reiss DJ, et al. Among authors: plaisier cl. Nucleic Acids Res. 2015 Jul 27;43(13):e87. doi: 10.1093/nar/gkv300. Epub 2015 Apr 14. Nucleic Acids Res. 2015. PMID: 25873626 Free PMC article.

7

Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.

Plaisier CL, O'Brien S, Bernard B, Reynolds S, Simon Z, Toledo CM, Ding Y, Reiss DJ, Paddison PJ, Baliga NS. Plaisier CL, et al. Cell Syst. 2016 Aug;3(2):172-186. doi: 10.1016/j.cels.2016.06.006. Epub 2016 Jul 14. Cell Syst. 2016. PMID: 27426982 Free PMC article.

8

MiR-155-regulated molecular network orchestrates cell fate in the innate and adaptive immune response to Mycobacterium tuberculosis.

Rothchild AC, Sissons JR, Shafiani S, Plaisier C, Min D, Mai D, Gilchrist M, Peschon J, Larson RP, Bergthaler A, Baliga NS, Urdahl KB, Aderem A. Rothchild AC, et al. Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):E6172-E6181. doi: 10.1073/pnas.1608255113. Epub 2016 Sep 28. Proc Natl Acad Sci U S A. 2016. PMID: 27681624 Free PMC article.

9

Niche adaptation by expansion and reprogramming of general transcription factors.

Turkarslan S, Reiss DJ, Gibbins G, Su WL, Pan M, Bare JC, Plaisier CL, Baliga NS. Turkarslan S, et al. Among authors: plaisier cl. Mol Syst Biol. 2011 Nov 22;7:554. doi: 10.1038/msb.2011.87. Mol Syst Biol. 2011. PMID: 22108796 Free PMC article.

10

Inference of expanded Lrp-like feast/famine transcription factor targets in a non-model organism using protein structure-based prediction.

Ashworth J, Plaisier CL, Lo FY, Reiss DJ, Baliga NS. Ashworth J, et al. Among authors: plaisier cl. PLoS One. 2014 Sep 25;9(9):e107863. doi: 10.1371/journal.pone.0107863. eCollection 2014. PLoS One. 2014. PMID: 25255272 Free PMC article.

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