Cram JA - Search Results

1

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years.

Cram JA, Chow CE, Sachdeva R, Needham DM, Parada AE, Steele JA, Fuhrman JA. Cram JA, et al. ISME J. 2015 Mar;9(3):563-80. doi: 10.1038/ismej.2014.153. Epub 2014 Sep 9. ISME J. 2015. PMID: 25203836 Free PMC article.

2

Accurate genome relative abundance estimation based on shotgun metagenomic reads.

Xia LC, Cram JA, Chen T, Fuhrman JA, Sun F. Xia LC, et al. Among authors: cram ja. PLoS One. 2011;6(12):e27992. doi: 10.1371/journal.pone.0027992. Epub 2011 Dec 6. PLoS One. 2011. PMID: 22162995 Free PMC article.

3

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.

Xia LC, Steele JA, Cram JA, Cardon ZG, Simmons SL, Vallino JJ, Fuhrman JA, Sun F. Xia LC, et al. Among authors: cram ja. BMC Syst Biol. 2011;5 Suppl 2(Suppl 2):S15. doi: 10.1186/1752-0509-5-S2-S15. Epub 2011 Dec 14. BMC Syst Biol. 2011. PMID: 22784572 Free PMC article.

4

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.

Xia LC, Ai D, Cram J, Fuhrman JA, Sun F. Xia LC, et al. Among authors: cram j. Bioinformatics. 2013 Jan 15;29(2):230-7. doi: 10.1093/bioinformatics/bts668. Epub 2012 Nov 23. Bioinformatics. 2013. PMID: 23178636 Free PMC article.

5

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience.

Needham DM, Chow CE, Cram JA, Sachdeva R, Parada A, Fuhrman JA. Needham DM, et al. Among authors: cram ja. ISME J. 2013 Jul;7(7):1274-85. doi: 10.1038/ismej.2013.19. Epub 2013 Feb 28. ISME J. 2013. PMID: 23446831 Free PMC article.

6

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight.

Chow CE, Sachdeva R, Cram JA, Steele JA, Needham DM, Patel A, Parada AE, Fuhrman JA. Chow CE, et al. Among authors: cram ja. ISME J. 2013 Dec;7(12):2259-73. doi: 10.1038/ismej.2013.122. Epub 2013 Jul 18. ISME J. 2013. PMID: 23864126 Free PMC article.

7

Marine microbial community dynamics and their ecological interpretation.

Fuhrman JA, Cram JA, Needham DM. Fuhrman JA, et al. Among authors: cram ja. Nat Rev Microbiol. 2015 Mar;13(3):133-46. doi: 10.1038/nrmicro3417. Epub 2015 Feb 9. Nat Rev Microbiol. 2015. PMID: 25659323 Review.

8

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes.

Cram JA, Xia LC, Needham DM, Sachdeva R, Sun F, Fuhrman JA. Cram JA, et al. ISME J. 2015 Dec;9(12):2573-86. doi: 10.1038/ismej.2015.76. Epub 2015 May 19. ISME J. 2015. PMID: 25989373 Free PMC article.

9

Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains.

Xia LC, Ai D, Cram JA, Liang X, Fuhrman JA, Sun F. Xia LC, et al. Among authors: cram ja. BMC Bioinformatics. 2015 Sep 21;16:301. doi: 10.1186/s12859-015-0732-8. BMC Bioinformatics. 2015. PMID: 26390921 Free PMC article.

10

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu ZZ, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, Zhou J, Knight R. Weiss S, et al. Among authors: cram ja. ISME J. 2016 Jul;10(7):1669-81. doi: 10.1038/ismej.2015.235. Epub 2016 Feb 23. ISME J. 2016. PMID: 26905627 Free PMC article.

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