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141 results

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Page 1
Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans.
Visser M, Parshina SN, Alves JI, Sousa DZ, Pereira IA, Muyzer G, Kuever J, Lebedinsky AV, Koehorst JJ, Worm P, Plugge CM, Schaap PJ, Goodwin LA, Lapidus A, Kyrpides NC, Detter JC, Woyke T, Chain P, Davenport KW, Spring S, Rohde M, Klenk HP, Stams AJ. Visser M, et al. Among authors: davenport kw. Stand Genomic Sci. 2014 Mar 1;9(3):655-75. doi: 10.4056/sigs.4718645. eCollection 2014 Jun 15. Stand Genomic Sci. 2014. PMID: 25197452 Free PMC article.
Complete genome sequence of Thermosphaera aggregans type strain (M11TL).
Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CC, Brettin T, Detter JC, Tapia R, Han C, Heimerl T, Weikl F, Brambilla E, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Spring S, et al. Stand Genomic Sci. 2010 Jun 15;2(3):245-59. doi: 10.4056/sigs.821804. Stand Genomic Sci. 2010. PMID: 21304709 Free PMC article.
Complete genome sequence of Desulfarculus baarsii type strain (2st14).
Sun H, Spring S, Lapidus A, Davenport K, Del Rio TG, Tice H, Nolan M, Copeland A, Cheng JF, Lucas S, Tapia R, Goodwin L, Pitluck S, Ivanova N, Pagani I, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Detter JC, Han C, Rohde M, Brambilla E, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M. Sun H, et al. Stand Genomic Sci. 2010 Nov 20;3(3):276-84. doi: 10.4056/sigs.1243258. Stand Genomic Sci. 2010. PMID: 21304732 Free PMC article.
Complete genome sequence of Ferrimonas balearica type strain (PAT).
Nolan M, Sikorski J, Davenport K, Lucas S, Del Rio TG, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Tapia R, Brettin T, Detter JC, Han C, Yasawong M, Rohde M, Tindall BJ, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Nolan M, et al. Stand Genomic Sci. 2010 Oct 27;3(2):174-82. doi: 10.4056/sigs.1161239. Stand Genomic Sci. 2010. PMID: 21304747 Free PMC article.
Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract.
van Passel MW, Kant R, Palva A, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce D, Goodwin L, Pitluck S, Davenport KW, Sims D, Brettin TS, Detter JC, Han S, Larimer FW, Land ML, Hauser L, Kyrpides N, Ovchinnikova G, Richardson PP, de Vos WM, Smidt H, Zoetendal EG. van Passel MW, et al. Among authors: davenport kw. J Bacteriol. 2011 May;193(9):2373-4. doi: 10.1128/JB.00271-11. Epub 2011 Mar 11. J Bacteriol. 2011. PMID: 21398537 Free PMC article.
Complete genome sequence of Desulfobulbus propionicus type strain (1pr3).
Pagani I, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Chertkov O, Davenport K, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brambilla E, Kannan KP, Djao OD, Rohde M, Pukall R, Spring S, Göker M, Sikorski J, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Pagani I, et al. Stand Genomic Sci. 2011 Feb 20;4(1):100-10. doi: 10.4056/sigs.1613929. Stand Genomic Sci. 2011. PMID: 21475592 Free PMC article.
Genomics for key players in the N cycle from guinea pigs to the next frontier.
Chain PS, Xie G, Starkenburg SR, Scholz MB, Beckloff N, Lo CC, Davenport KW, Reitenga KG, Daligault HE, Detter JC, Freitas TA, Gleasner CD, Green LD, Han CS, McMurry KK, Meincke LJ, Shen X, Zeytun A. Chain PS, et al. Among authors: davenport kw. Methods Enzymol. 2011;496:289-318. doi: 10.1016/B978-0-12-386489-5.00012-9. Methods Enzymol. 2011. PMID: 21514469 Review.
Complete genome sequence of Staphylothermus hellenicus P8.
Anderson I, Wirth R, Lucas S, Copeland A, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Davenport K, Detter JC, Han C, Tapia R, Land M, Hauser L, Pati A, Mikhailova N, Woyke T, Klenk HP, Kyrpides N, Ivanova N. Anderson I, et al. Stand Genomic Sci. 2011 Oct 15;5(1):12-20. doi: 10.4056/sigs.2054696. Epub 2011 Sep 23. Stand Genomic Sci. 2011. PMID: 22180806 Free PMC article.
Complete genome sequence of "Enterobacter lignolyticus" SCF1.
Deangelis KM, D'Haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport KW, Goodwin L, Chen A, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, Hazen TC. Deangelis KM, et al. Among authors: davenport kw. Stand Genomic Sci. 2011 Oct 15;5(1):69-85. doi: 10.4056/sigs.2104875. Epub 2011 Sep 23. Stand Genomic Sci. 2011. PMID: 22180812 Free PMC article.
A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.
Siddaramappa S, Challacombe JF, Decastro RE, Pfeiffer F, Sastre DE, Giménez MI, Paggi RA, Detter JC, Davenport KW, Goodwin LA, Kyrpides N, Tapia R, Pitluck S, Lucas S, Woyke T, Maupin-Furlow JA. Siddaramappa S, et al. Among authors: davenport kw. BMC Genomics. 2012 May 4;13:165. doi: 10.1186/1471-2164-13-165. BMC Genomics. 2012. PMID: 22559199 Free PMC article.
141 results