Shi L - Search Results

1

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.

Wang C, Gong B, Bushel PR, Thierry-Mieg J, Thierry-Mieg D, Xu J, Fang H, Hong H, Shen J, Su Z, Meehan J, Li X, Yang L, Li H, Łabaj PP, Kreil DP, Megherbi D, Gaj S, Caiment F, van Delft J, Kleinjans J, Scherer A, Devanarayan V, Wang J, Yang Y, Qian HR, Lancashire LJ, Bessarabova M, Nikolsky Y, Furlanello C, Chierici M, Albanese D, Jurman G, Riccadonna S, Filosi M, Visintainer R, Zhang KK, Li J, Hsieh JH, Svoboda DL, Fuscoe JC, Deng Y, Shi L, Paules RS, Auerbach SS, Tong W. Wang C, et al. Among authors: shi l. Nat Biotechnol. 2014 Sep;32(9):926-32. doi: 10.1038/nbt.3001. Epub 2014 Aug 24. Nat Biotechnol. 2014. PMID: 25150839 Free PMC article.

2

QSAR models using a large diverse set of estrogens.

Shi LM, Fang H, Tong W, Wu J, Perkins R, Blair RM, Branham WS, Dial SL, Moland CL, Sheehan DM. Shi LM, et al. J Chem Inf Comput Sci. 2001 Jan-Feb;41(1):186-95. doi: 10.1021/ci000066d. J Chem Inf Comput Sci. 2001. PMID: 11206373

3

Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.

Hong H, Tong W, Fang H, Shi L, Xie Q, Wu J, Perkins R, Walker JD, Branham W, Sheehan DM. Hong H, et al. Among authors: shi l. Environ Health Perspect. 2002 Jan;110(1):29-36. doi: 10.1289/ehp.0211029. Environ Health Perspect. 2002. PMID: 11781162 Free PMC article.

4

Phytoestrogens and mycoestrogens bind to the rat uterine estrogen receptor.

Branham WS, Dial SL, Moland CL, Hass BS, Blair RM, Fang H, Shi L, Tong W, Perkins RG, Sheehan DM. Branham WS, et al. Among authors: shi l. J Nutr. 2002 Apr;132(4):658-64. doi: 10.1093/jn/132.4.658. J Nutr. 2002. PMID: 11925457

5

Structure-activity relationship approaches and applications.

Tong W, Welsh WJ, Shi L, Fang H, Perkins R. Tong W, et al. Among authors: shi l. Environ Toxicol Chem. 2003 Aug;22(8):1680-95. doi: 10.1897/01-198. Environ Toxicol Chem. 2003. PMID: 12924570 Review.

6

ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.

Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Shi L, Casciano D. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2003 Nov;111(15):1819-26. doi: 10.1289/ehp.6497. Environ Health Perspect. 2003. PMID: 14630514 Free PMC article. Review.

7

Development of public toxicogenomics software for microarray data management and analysis.

Tong W, Harris S, Cao X, Fang H, Shi L, Sun H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, Casciano D. Tong W, et al. Among authors: shi l. Mutat Res. 2004 May 18;549(1-2):241-53. doi: 10.1016/j.mrfmmm.2003.12.024. Mutat Res. 2004. PMID: 15120974

8

Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.

Tan Y, Shi L, Tong W, Hwang GT, Wang C. Tan Y, et al. Among authors: shi l. Comput Biol Chem. 2004 Jul;28(3):235-44. doi: 10.1016/j.compbiolchem.2004.05.002. Comput Biol Chem. 2004. PMID: 15261154

9

Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2004 Aug;112(12):1249-54. doi: 10.1289/txg.7125. Environ Health Perspect. 2004. PMID: 15345371 Free PMC article.

10

QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies.

Shi L, Tong W, Goodsaid F, Frueh FW, Fang H, Han T, Fuscoe JC, Casciano DA. Shi L, et al. Expert Rev Mol Diagn. 2004 Nov;4(6):761-77. doi: 10.1586/14737159.4.6.761. Expert Rev Mol Diagn. 2004. PMID: 15525219 Review.

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