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The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.
Wang C, Gong B, Bushel PR, Thierry-Mieg J, Thierry-Mieg D, Xu J, Fang H, Hong H, Shen J, Su Z, Meehan J, Li X, Yang L, Li H, Łabaj PP, Kreil DP, Megherbi D, Gaj S, Caiment F, van Delft J, Kleinjans J, Scherer A, Devanarayan V, Wang J, Yang Y, Qian HR, Lancashire LJ, Bessarabova M, Nikolsky Y, Furlanello C, Chierici M, Albanese D, Jurman G, Riccadonna S, Filosi M, Visintainer R, Zhang KK, Li J, Hsieh JH, Svoboda DL, Fuscoe JC, Deng Y, Shi L, Paules RS, Auerbach SS, Tong W. Wang C, et al. Among authors: qian hr. Nat Biotechnol. 2014 Sep;32(9):926-32. doi: 10.1038/nbt.3001. Epub 2014 Aug 24. Nat Biotechnol. 2014. PMID: 25150839 Free PMC article.
Assessing the variability in GeneChip data.
Huang S, Qian HR, Geringer C, Love C, Gelbert L, Bemis K. Huang S, et al. Among authors: qian hr. Am J Pharmacogenomics. 2003;3(4):279-90. doi: 10.2165/00129785-200303040-00005. Am J Pharmacogenomics. 2003. PMID: 12930160
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories.
Boedigheimer MJ, Wolfinger RD, Bass MB, Bushel PR, Chou JW, Cooper M, Corton JC, Fostel J, Hester S, Lee JS, Liu F, Liu J, Qian HR, Quackenbush J, Pettit S, Thompson KL. Boedigheimer MJ, et al. Among authors: qian hr. BMC Genomics. 2008 Jun 12;9:285. doi: 10.1186/1471-2164-9-285. BMC Genomics. 2008. PMID: 18549499 Free PMC article.
The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog.
Smith A, Calley J, Mathur S, Qian HR, Wu H, Farmen M, Caiment F, Bushel PR, Li J, Fisher C, Kirby P, Koenig E, Hall DG, Watson DE. Smith A, et al. Among authors: qian hr. BMC Genomics. 2016 Aug 30;17(1):694. doi: 10.1186/s12864-016-2956-z. BMC Genomics. 2016. PMID: 27576563 Free PMC article.
Identification of blood biomarkers of rheumatoid arthritis by transcript profiling of peripheral blood mononuclear cells from the rat collagen-induced arthritis model.
Shou J, Bull CM, Li L, Qian HR, Wei T, Luo S, Perkins D, Solenberg PJ, Tan SL, Chen XY, Roehm NW, Wolos JA, Onyia JE. Shou J, et al. Among authors: qian hr. Arthritis Res Ther. 2006;8(1):R28. doi: 10.1186/ar1883. Epub 2006 Jan 10. Arthritis Res Ther. 2006. PMID: 16507131 Free PMC article.
72 results