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Developments in the CCP4 molecular-graphics project.
Potterton L, McNicholas S, Krissinel E, Gruber J, Cowtan K, Emsley P, Murshudov GN, Cohen S, Perrakis A, Noble M. Potterton L, et al. Among authors: perrakis a. Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2288-94. doi: 10.1107/S0907444904023716. Epub 2004 Nov 26. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15572783
SPINE workshop on automated X-ray analysis: a progress report.
Bahar M, Ballard C, Cohen SX, Cowtan KD, Dodson EJ, Emsley P, Esnouf RM, Keegan R, Lamzin V, Langer G, Levdikov V, Long F, Meier C, Muller A, Murshudov GN, Perrakis A, Siebold C, Stein N, Turkenburg MG, Vagin AA, Winn M, Winter G, Wilson KS. Bahar M, et al. Among authors: perrakis a. Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1170-83. doi: 10.1107/S0907444906032197. Epub 2006 Sep 19. Acta Crystallogr D Biol Crystallogr. 2006. PMID: 17001094 Review.
ARP/wARP and molecular replacement: the next generation.
Cohen SX, Ben Jelloul M, Long F, Vagin A, Knipscheer P, Lebbink J, Sixma TK, Lamzin VS, Murshudov GN, Perrakis A. Cohen SX, et al. Among authors: perrakis a. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):49-60. doi: 10.1107/S0907444907047580. Epub 2007 Dec 5. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18094467 Free PMC article.
A new generation of crystallographic validation tools for the protein data bank.
Read RJ, Adams PD, Arendall WB 3rd, Brunger AT, Emsley P, Joosten RP, Kleywegt GJ, Krissinel EB, Lütteke T, Otwinowski Z, Perrakis A, Richardson JS, Sheffler WH, Smith JL, Tickle IJ, Vriend G, Zwart PH. Read RJ, et al. Among authors: perrakis a. Structure. 2011 Oct 12;19(10):1395-412. doi: 10.1016/j.str.2011.08.006. Structure. 2011. PMID: 22000512 Free PMC article.
Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.
Joosten RP, Joosten K, Cohen SX, Vriend G, Perrakis A. Joosten RP, et al. Among authors: perrakis a. Bioinformatics. 2011 Dec 15;27(24):3392-8. doi: 10.1093/bioinformatics/btr590. Epub 2011 Oct 27. Bioinformatics. 2011. PMID: 22034521 Free PMC article.
MOTIVATION: Macromolecular crystal structures in the Protein Data Bank (PDB) are a key source of structural insight into biological processes. These structures, some >30 years old, were constructed with methods of their era. ...CONTACT: r.joosten@nki.nl; a.per …
MOTIVATION: Macromolecular crystal structures in the Protein Data Bank (PDB) are a key source of structural insight into biological p …
PDB_REDO: constructive validation, more than just looking for errors.
Joosten RP, Joosten K, Murshudov GN, Perrakis A. Joosten RP, et al. Among authors: perrakis a. Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):484-96. doi: 10.1107/S0907444911054515. Epub 2012 Mar 16. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 22505269 Free PMC article.
249 results