Dotu I - Search Results

1

RNA function. Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration.

Ishimura R, Nagy G, Dotu I, Zhou H, Yang XL, Schimmel P, Senju S, Nishimura Y, Chuang JH, Ackerman SL. Ishimura R, et al. Among authors: dotu i. Science. 2014 Jul 25;345(6195):455-9. doi: 10.1126/science.1249749. Science. 2014. PMID: 25061210 Free PMC article.

2

Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation.

Ishimura R, Nagy G, Dotu I, Chuang JH, Ackerman SL. Ishimura R, et al. Among authors: dotu i. Elife. 2016 Apr 16;5:e14295. doi: 10.7554/eLife.14295. Elife. 2016. PMID: 27085088 Free PMC article.

3

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

Dotu I, Adamson SI, Coleman B, Fournier C, Ricart-Altimiras E, Eyras E, Chuang JH. Dotu I, et al. PLoS Comput Biol. 2018 Mar 29;14(3):e1006078. doi: 10.1371/journal.pcbi.1006078. eCollection 2018 Mar. PLoS Comput Biol. 2018. PMID: 29596423 Free PMC article.

4

Genetic Architectures of Quantitative Variation in RNA Editing Pathways.

Gu T, Gatti DM, Srivastava A, Snyder EM, Raghupathy N, Simecek P, Svenson KL, Dotu I, Chuang JH, Keller MP, Attie AD, Braun RE, Churchill GA. Gu T, et al. Among authors: dotu i. Genetics. 2016 Feb;202(2):787-98. doi: 10.1534/genetics.115.179481. Epub 2015 Nov 27. Genetics. 2016. PMID: 26614740 Free PMC article.

5

Integrating chemical footprinting data into RNA secondary structure prediction.

Zarringhalam K, Meyer MM, Dotu I, Chuang JH, Clote P. Zarringhalam K, et al. Among authors: dotu i. PLoS One. 2012;7(10):e45160. doi: 10.1371/journal.pone.0045160. Epub 2012 Oct 16. PLoS One. 2012. PMID: 23091593 Free PMC article.

6

The discovery potential of RNA processing profiles.

Pagès A, Dotu I, Pallarès-Albanell J, Martí E, Guigó R, Eyras E. Pagès A, et al. Among authors: dotu i. Nucleic Acids Res. 2018 Feb 16;46(3):e15. doi: 10.1093/nar/gkx1115. Nucleic Acids Res. 2018. PMID: 29155959 Free PMC article.

7

On the page number of RNA secondary structures with pseudoknots.

Clote P, Dobrev S, Dotu I, Kranakis E, Krizanc D, Urrutia J. Clote P, et al. Among authors: dotu i. J Math Biol. 2012 Dec;65(6-7):1337-57. doi: 10.1007/s00285-011-0493-6. Epub 2011 Dec 10. J Math Biol. 2012. PMID: 22159642

8

Using the fast fourier transform to accelerate the computational search for RNA conformational switches.

Senter E, Sheikh S, Dotu I, Ponty Y, Clote P. Senter E, et al. Among authors: dotu i. PLoS One. 2012;7(12):e50506. doi: 10.1371/journal.pone.0050506. Epub 2012 Dec 19. PLoS One. 2012. PMID: 23284639 Free PMC article.

9

RNAiFold: a web server for RNA inverse folding and molecular design.

Garcia-Martin JA, Clote P, Dotu I. Garcia-Martin JA, et al. Among authors: dotu i. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W465-70. doi: 10.1093/nar/gkt280. Epub 2013 May 21. Nucleic Acids Res. 2013. PMID: 23700314 Free PMC article.

10

Energy parameters and novel algorithms for an extended nearest neighbor energy model of RNA.

Dotu I, Mechery V, Clote P. Dotu I, et al. PLoS One. 2014 Feb 21;9(2):e85412. doi: 10.1371/journal.pone.0085412. eCollection 2014. PLoS One. 2014. PMID: 24586240 Free PMC article.

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