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SVAMP: sequence variation analysis, maps and phylogeny.
Naeem R, Hidayah L, Preston MD, Clark TG, Pain A. Naeem R, et al. Bioinformatics. 2014 Aug 1;30(15):2227-9. doi: 10.1093/bioinformatics/btu176. Epub 2014 Apr 3. Bioinformatics. 2014. PMID: 24700318 Free PMC article.
Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features.
Ramaprasad A, Mourier T, Naeem R, Malas TB, Moussa E, Panigrahi A, Vermont SJ, Otto TD, Wastling J, Pain A. Ramaprasad A, et al. Among authors: naeem r. PLoS One. 2015 Apr 13;10(4):e0124473. doi: 10.1371/journal.pone.0124473. eCollection 2015. PLoS One. 2015. PMID: 25875305 Free PMC article.
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
Woo YH, Ansari H, Otto TD, Klinger CM, Kolisko M, Michálek J, Saxena A, Shanmugam D, Tayyrov A, Veluchamy A, Ali S, Bernal A, del Campo J, Cihlář J, Flegontov P, Gornik SG, Hajdušková E, Horák A, Janouškovec J, Katris NJ, Mast FD, Miranda-Saavedra D, Mourier T, Naeem R, Nair M, Panigrahi AK, Rawlings ND, Padron-Regalado E, Ramaprasad A, Samad N, Tomčala A, Wilkes J, Neafsey DE, Doerig C, Bowler C, Keeling PJ, Roos DS, Dacks JB, Templeton TJ, Waller RF, Lukeš J, Oborník M, Pain A. Woo YH, et al. Among authors: naeem r. Elife. 2015 Jul 15;4:e06974. doi: 10.7554/eLife.06974. Elife. 2015. PMID: 26175406 Free PMC article.
Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations.
Abdallah AM, Hill-Cawthorne GA, Otto TD, Coll F, Guerra-Assunção JA, Gao G, Naeem R, Ansari H, Malas TB, Adroub SA, Verboom T, Ummels R, Zhang H, Panigrahi AK, McNerney R, Brosch R, Clark TG, Behr MA, Bitter W, Pain A. Abdallah AM, et al. Among authors: naeem r. Sci Rep. 2015 Oct 21;5:15443. doi: 10.1038/srep15443. Sci Rep. 2015. PMID: 26487098 Free PMC article.
Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species.
Ansari HR, Templeton TJ, Subudhi AK, Ramaprasad A, Tang J, Lu F, Naeem R, Hashish Y, Oguike MC, Benavente ED, Clark TG, Sutherland CJ, Barnwell JW, Culleton R, Cao J, Pain A. Ansari HR, et al. Among authors: naeem r. Int J Parasitol. 2016 Oct;46(11):685-96. doi: 10.1016/j.ijpara.2016.05.009. Epub 2016 Jul 5. Int J Parasitol. 2016. PMID: 27392654 Free article.
118 results