Ding F - Search Results

1

Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity.

Nedumpully-Govindan P, Li L, Alexov EG, Blenner MA, Ding F. Nedumpully-Govindan P, et al. Among authors: ding f. Bioinformatics. 2014 Aug 15;30(16):2302-9. doi: 10.1093/bioinformatics/btu309. Epub 2014 May 2. Bioinformatics. 2014. PMID: 24794930 Free PMC article.

2

Effect of fullerenol surface chemistry on nanoparticle binding-induced protein misfolding.

Radic S, Nedumpully-Govindan P, Chen R, Salonen E, Brown JM, Ke PC, Ding F. Radic S, et al. Among authors: ding f. Nanoscale. 2014 Jul 21;6(14):8340-9. doi: 10.1039/c4nr01544d. Nanoscale. 2014. PMID: 24934397

3

Thermostability and reversibility of silver nanoparticle-protein binding.

Wang B, Seabrook SA, Nedumpully-Govindan P, Chen P, Yin H, Waddington L, Epa VC, Winkler DA, Kirby JK, Ding F, Ke PC. Wang B, et al. Among authors: ding f. Phys Chem Chem Phys. 2015 Jan 21;17(3):1728-39. doi: 10.1039/c4cp04996a. Epub 2014 Dec 2. Phys Chem Chem Phys. 2015. PMID: 25461673

4

Inhibition of IAPP aggregation by insulin depends on the insulin oligomeric state regulated by zinc ion concentration.

Nedumpully-Govindan P, Ding F. Nedumpully-Govindan P, et al. Among authors: ding f. Sci Rep. 2015 Feb 4;5:8240. doi: 10.1038/srep08240. Sci Rep. 2015. PMID: 25649462 Free PMC article.

5

CSAR Benchmark of Flexible MedusaDock in Affinity Prediction and Nativelike Binding Pose Selection.

Nedumpully-Govindan P, Jemec DB, Ding F. Nedumpully-Govindan P, et al. Among authors: ding f. J Chem Inf Model. 2016 Jun 27;56(6):1042-52. doi: 10.1021/acs.jcim.5b00303. Epub 2015 Aug 17. J Chem Inf Model. 2016. PMID: 26252196

6

Promotion or Inhibition of Islet Amyloid Polypeptide Aggregation by Zinc Coordination Depends on Its Relative Concentration.

Nedumpully-Govindan P, Yang Y, Andorfer R, Cao W, Ding F. Nedumpully-Govindan P, et al. Among authors: ding f. Biochemistry. 2015 Dec 22;54(50):7335-44. doi: 10.1021/acs.biochem.5b00891. Epub 2015 Dec 4. Biochemistry. 2015. PMID: 26603575

7

Graphene oxide inhibits hIAPP amyloid fibrillation and toxicity in insulin-producing NIT-1 cells.

Nedumpully-Govindan P, Gurzov EN, Chen P, Pilkington EH, Stanley WJ, Litwak SA, Davis TP, Ke PC, Ding F. Nedumpully-Govindan P, et al. Among authors: ding f. Phys Chem Chem Phys. 2016 Jan 7;18(1):94-100. doi: 10.1039/c5cp05924k. Epub 2015 Dec 2. Phys Chem Chem Phys. 2016. PMID: 26625841 Free PMC article.

8

Stabilizing Off-pathway Oligomers by Polyphenol Nanoassemblies for IAPP Aggregation Inhibition.

Nedumpully-Govindan P, Kakinen A, Pilkington EH, Davis TP, Chun Ke P, Ding F. Nedumpully-Govindan P, et al. Among authors: ding f. Sci Rep. 2016 Jan 14;6:19463. doi: 10.1038/srep19463. Sci Rep. 2016. PMID: 26763863 Free PMC article.

9

Gaia: automated quality assessment of protein structure models.

Kota P, Ding F, Ramachandran S, Dokholyan NV. Kota P, et al. Among authors: ding f. Bioinformatics. 2011 Aug 15;27(16):2209-15. doi: 10.1093/bioinformatics/btr374. Epub 2011 Jun 23. Bioinformatics. 2011. PMID: 21700672 Free PMC article.

10

iFold: a platform for interactive folding simulations of proteins.

Sharma S, Ding F, Nie H, Watson D, Unnithan A, Lopp J, Pozefsky D, Dokholyan NV. Sharma S, et al. Among authors: ding f. Bioinformatics. 2006 Nov 1;22(21):2693-4. doi: 10.1093/bioinformatics/btl460. Epub 2006 Aug 29. Bioinformatics. 2006. PMID: 16940324

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