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qcML: an exchange format for quality control metrics from mass spectrometry experiments.
Walzer M, Pernas LE, Nasso S, Bittremieux W, Nahnsen S, Kelchtermans P, Pichler P, van den Toorn HW, Staes A, Vandenbussche J, Mazanek M, Taus T, Scheltema RA, Kelstrup CD, Gatto L, van Breukelen B, Aiche S, Valkenborg D, Laukens K, Lilley KS, Olsen JV, Heck AJ, Mechtler K, Aebersold R, Gevaert K, Vizcaíno JA, Hermjakob H, Kohlbacher O, Martens L. Walzer M, et al. Among authors: gatto l. Mol Cell Proteomics. 2014 Aug;13(8):1905-13. doi: 10.1074/mcp.M113.035907. Epub 2014 Apr 23. Mol Cell Proteomics. 2014. PMID: 24760958 Free PMC article.
Organelle proteomics experimental designs and analysis.
Gatto L, Vizcaíno JA, Hermjakob H, Huber W, Lilley KS. Gatto L, et al. Proteomics. 2010 Nov;10(22):3957-69. doi: 10.1002/pmic.201000244. Epub 2010 Nov 2. Proteomics. 2010. PMID: 21080489 Review.
Challenges for proteomics core facilities.
Lilley KS, Deery MJ, Gatto L. Lilley KS, et al. Among authors: gatto l. Proteomics. 2011 Mar;11(6):1017-25. doi: 10.1002/pmic.201000693. Epub 2011 Feb 16. Proteomics. 2011. PMID: 21360676
Using R and Bioconductor for proteomics data analysis.
Gatto L, Christoforou A. Gatto L, et al. Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):42-51. doi: 10.1016/j.bbapap.2013.04.032. Epub 2013 May 18. Biochim Biophys Acta. 2014. PMID: 23692960 Review.
RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.
Wilf NM, Reid AJ, Ramsay JP, Williamson NR, Croucher NJ, Gatto L, Hester SS, Goulding D, Barquist L, Lilley KS, Kingsley RA, Dougan G, Salmond GP. Wilf NM, et al. Among authors: gatto l. BMC Genomics. 2013 Nov 22;14(1):822. doi: 10.1186/1471-2164-14-822. BMC Genomics. 2013. PMID: 24267595 Free PMC article.
441 results