Rigden DJ - Search Results

1

Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase.

Sheydina A, Eberhardt RY, Rigden DJ, Chang Y, Li Z, Zmasek CC, Axelrod HL, Godzik A. Sheydina A, et al. Among authors: rigden dj. BMC Bioinformatics. 2014 Apr 17;15:112. doi: 10.1186/1471-2105-15-112. BMC Bioinformatics. 2014. PMID: 24742328 Free PMC article.

2

The first structure in a family of peptidase inhibitors reveals an unusual Ig-like fold.

Rigden DJ, Xu Q, Chang Y, Eberhardt RY, Finn RD, Rawlings ND. Rigden DJ, et al. F1000Res. 2013 Jul 10;2:154. doi: 10.12688/f1000research.2-154.v2. eCollection 2013. F1000Res. 2013. PMID: 24555072 Free PMC article.

3

Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of glycoside hydrolase.

Rigden DJ, Eberhardt RY, Gilbert HJ, Xu Q, Chang Y, Godzik A. Rigden DJ, et al. BMC Bioinformatics. 2014 Jun 17;15:196. doi: 10.1186/1471-2105-15-196. BMC Bioinformatics. 2014. PMID: 24938123 Free PMC article.

4

Beta-helical catalytic domains in glycoside hydrolase families 49, 55 and 87: domain architecture, modelling and assignment of catalytic residues.

Rigden DJ, Franco OL. Rigden DJ, et al. FEBS Lett. 2002 Oct 23;530(1-3):225-32. doi: 10.1016/s0014-5793(02)03490-7. FEBS Lett. 2002. PMID: 12387897 Free article.

5

Identification and analysis of catalytic TIM barrel domains in seven further glycoside hydrolase families.

Rigden DJ, Jedrzejas MJ, de Mello LV. Rigden DJ, et al. FEBS Lett. 2003 Jun 5;544(1-3):103-11. doi: 10.1016/s0014-5793(03)00481-2. FEBS Lett. 2003. PMID: 12782298 Free article.

6

Analysis of glycoside hydrolase family 98: catalytic machinery, mechanism and a novel putative carbohydrate binding module.

Rigden DJ. Rigden DJ. FEBS Lett. 2005 Oct 24;579(25):5466-72. doi: 10.1016/j.febslet.2005.09.011. Epub 2005 Sep 26. FEBS Lett. 2005. PMID: 16212961 Free article.

7

Sequence analysis and characterization of a novel fibronectin-binding repeat domain from the surface of Streptococcus pneumoniae.

Bumbaca D, Littlejohn JE, Nayakanti H, Rigden DJ, Galperin MY, Jedrzejas MJ. Bumbaca D, et al. Among authors: rigden dj. OMICS. 2004 Winter;8(4):341-56. doi: 10.1089/omi.2004.8.341. OMICS. 2004. PMID: 15703481

8

Sequence analysis of GerM and SpoVS, uncharacterized bacterial 'sporulation' proteins with widespread phylogenetic distribution.

Rigden DJ, Galperin MY. Rigden DJ, et al. Bioinformatics. 2008 Aug 15;24(16):1793-7. doi: 10.1093/bioinformatics/btn314. Epub 2008 Jun 17. Bioinformatics. 2008. PMID: 18562273 Free PMC article.

9

Ab initio protein modelling reveals novel human MIT domains.

Rigden DJ, Liu H, Hayes SD, Urbé S, Clague MJ. Rigden DJ, et al. FEBS Lett. 2009 Mar 4;583(5):872-8. doi: 10.1016/j.febslet.2009.02.012. Epub 2009 Feb 12. FEBS Lett. 2009. PMID: 19302785 Free article.

10

A new family of bacterial DNA repair proteins annotated by the integration of non-homology, distant homology and structural bioinformatic methods.

Mello LV, Rigden DJ. Mello LV, et al. Among authors: rigden dj. FEBS Lett. 2012 Nov 2;586(21):3908-13. doi: 10.1016/j.febslet.2012.09.023. Epub 2012 Sep 26. FEBS Lett. 2012. PMID: 23022560 Free article.

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