Li Z - Search Results

1

Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase.

Sheydina A, Eberhardt RY, Rigden DJ, Chang Y, Li Z, Zmasek CC, Axelrod HL, Godzik A. Sheydina A, et al. Among authors: li z. BMC Bioinformatics. 2014 Apr 17;15:112. doi: 10.1186/1471-2105-15-112. BMC Bioinformatics. 2014. PMID: 24742328 Free PMC article.

2

Flexible Structural Neighborhood--a database of protein structural similarities and alignments.

Li Z, Ye Y, Godzik A. Li Z, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80. doi: 10.1093/nar/gkj124. Nucleic Acids Res. 2006. PMID: 16381864 Free PMC article.

3

FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking.

Xu D, Jaroszewski L, Li Z, Godzik A. Xu D, et al. Among authors: li z. Bioinformatics. 2014 Mar 1;30(5):660-7. doi: 10.1093/bioinformatics/btt578. Epub 2013 Oct 15. Bioinformatics. 2014. PMID: 24130308 Free PMC article.

4

AIDA: ab initio domain assembly server.

Xu D, Jaroszewski L, Li Z, Godzik A. Xu D, et al. Among authors: li z. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W308-13. doi: 10.1093/nar/gku369. Epub 2014 May 15. Nucleic Acids Res. 2014. PMID: 24831546 Free PMC article.

5

AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain-domain interaction prediction.

Xu D, Jaroszewski L, Li Z, Godzik A. Xu D, et al. Among authors: li z. Bioinformatics. 2015 Jul 1;31(13):2098-105. doi: 10.1093/bioinformatics/btv092. Epub 2015 Feb 19. Bioinformatics. 2015. PMID: 25701568 Free PMC article.

6

Modeling and analyzing three-dimensional structures of human disease proteins.

Ye Y, Li Z, Godzik A. Ye Y, et al. Among authors: li z. Pac Symp Biocomput. 2006:439-50. Pac Symp Biocomput. 2006. PMID: 17094259 Free article.

7

Exploration of uncharted regions of the protein universe.

Jaroszewski L, Li Z, Krishna SS, Bakolitsa C, Wooley J, Deacon AM, Wilson IA, Godzik A. Jaroszewski L, et al. Among authors: li z. PLoS Biol. 2009 Sep;7(9):e1000205. doi: 10.1371/journal.pbio.1000205. Epub 2009 Sep 29. PLoS Biol. 2009. PMID: 19787035 Free PMC article.

8

Structural determinants of limited proteolysis.

Kazanov MD, Igarashi Y, Eroshkin AM, Cieplak P, Ratnikov B, Zhang Y, Li Z, Godzik A, Osterman AL, Smith JW. Kazanov MD, et al. Among authors: li z. J Proteome Res. 2011 Aug 5;10(8):3642-51. doi: 10.1021/pr200271w. Epub 2011 Jul 8. J Proteome Res. 2011. PMID: 21682278 Free PMC article.

9

FFAS server: novel features and applications.

Jaroszewski L, Li Z, Cai XH, Weber C, Godzik A. Jaroszewski L, et al. Among authors: li z. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W38-44. doi: 10.1093/nar/gkr441. Nucleic Acids Res. 2011. PMID: 21715387 Free PMC article.

10

Using an alignment of fragment strings for comparing protein structures.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Friedberg I, et al. Among authors: li z. Bioinformatics. 2007 Jan 15;23(2):e219-24. doi: 10.1093/bioinformatics/btl310. Bioinformatics. 2007. PMID: 17237095

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