Pavlichin DS - Search Results

1

Roles of long-range tertiary interactions in limiting dynamics of the Tetrahymena group I ribozyme.

Shi X, Bisaria N, Benz-Moy TL, Bonilla S, Pavlichin DS, Herschlag D. Shi X, et al. Among authors: pavlichin ds. J Am Chem Soc. 2014 May 7;136(18):6643-8. doi: 10.1021/ja413033d. Epub 2014 Apr 28. J Am Chem Soc. 2014. PMID: 24738560 Free PMC article.

2

Single Molecule Analysis Research Tool (SMART): an integrated approach for analyzing single molecule data.

Greenfeld M, Pavlichin DS, Mabuchi H, Herschlag D. Greenfeld M, et al. Among authors: pavlichin ds. PLoS One. 2012;7(2):e30024. doi: 10.1371/journal.pone.0030024. Epub 2012 Feb 20. PLoS One. 2012. PMID: 22363412 Free PMC article.

3

Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data.

Greenfeld M, van de Meent JW, Pavlichin DS, Mabuchi H, Wiggins CH, Gonzalez RL Jr, Herschlag D. Greenfeld M, et al. Among authors: pavlichin ds. BMC Bioinformatics. 2015 Jan 16;16(1):3. doi: 10.1186/s12859-014-0429-4. BMC Bioinformatics. 2015. PMID: 25591752 Free PMC article.

4

Kinetic and thermodynamic framework for P4-P6 RNA reveals tertiary motif modularity and modulation of the folding preferred pathway.

Bisaria N, Greenfeld M, Limouse C, Pavlichin DS, Mabuchi H, Herschlag D. Bisaria N, et al. Among authors: pavlichin ds. Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):E4956-65. doi: 10.1073/pnas.1525082113. Epub 2016 Aug 4. Proc Natl Acad Sci U S A. 2016. PMID: 27493222 Free PMC article.

5

Designing quantum memories with embedded control: photonic circuits for autonomous quantum error correction.

Kerckhoff J, Nurdin HI, Pavlichin DS, Mabuchi H. Kerckhoff J, et al. Among authors: pavlichin ds. Phys Rev Lett. 2010 Jul 23;105(4):040502. doi: 10.1103/PhysRevLett.105.040502. Epub 2010 Jul 22. Phys Rev Lett. 2010. PMID: 20867826

6

The dressed atom as binary phase modulator: towards attojoule/edge optical phase-shift keying.

Kerckhoff J, Armen MA, Pavlichin DS, Mabuchi H. Kerckhoff J, et al. Among authors: pavlichin ds. Opt Express. 2011 Mar 28;19(7):6478-86. doi: 10.1364/OE.19.006478. Opt Express. 2011. PMID: 21451676 Free article.

7

Specification of photonic circuits using quantum hardware description language.

Tezak N, Niederberger A, Pavlichin DS, Sarma G, Mabuchi H. Tezak N, et al. Among authors: pavlichin ds. Philos Trans A Math Phys Eng Sci. 2012 Nov 28;370(1979):5270-90. doi: 10.1098/rsta.2011.0526. Philos Trans A Math Phys Eng Sci. 2012. PMID: 23091208 Free PMC article.

8

The human genome contracts again.

Pavlichin DS, Weissman T, Yona G. Pavlichin DS, et al. Bioinformatics. 2013 Sep 1;29(17):2199-202. doi: 10.1093/bioinformatics/btt362. Epub 2013 Jun 22. Bioinformatics. 2013. PMID: 23793748

9

Chained Kullback-Leibler Divergences.

Pavlichin DS, Weissman T. Pavlichin DS, et al. Proc IEEE Int Symp Info Theory. 2016 Jul;2016:580-584. doi: 10.1109/ISIT.2016.7541365. Epub 2016 Aug 11. Proc IEEE Int Symp Info Theory. 2016. PMID: 29130024 Free PMC article.

10

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.

Lau BT, Pavlichin D, Hooker AC, Almeda A, Shin G, Chen J, Sahoo MK, Huang CH, Pinsky BA, Lee HJ, Ji HP. Lau BT, et al. Genome Med. 2021 Apr 19;13(1):62. doi: 10.1186/s13073-021-00882-2. Genome Med. 2021. PMID: 33875001 Free PMC article.

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