Dehzangi A - Search Results

1

Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping.

Lyons J, Biswas N, Sharma A, Dehzangi A, Paliwal KK. Lyons J, et al. Among authors: dehzangi a. J Theor Biol. 2014 Aug 7;354:137-45. doi: 10.1016/j.jtbi.2014.03.033. Epub 2014 Mar 31. J Theor Biol. 2014. PMID: 24698944

2

A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition.

Sharma A, Lyons J, Dehzangi A, Paliwal KK. Sharma A, et al. Among authors: dehzangi a. J Theor Biol. 2013 Mar 7;320:41-6. doi: 10.1016/j.jtbi.2012.12.008. Epub 2012 Dec 13. J Theor Biol. 2013. PMID: 23246717 Free article.

3

Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC.

Dehzangi A, Heffernan R, Sharma A, Lyons J, Paliwal K, Sattar A. Dehzangi A, et al. J Theor Biol. 2015 Jan 7;364:284-94. doi: 10.1016/j.jtbi.2014.09.029. Epub 2014 Sep 28. J Theor Biol. 2015. PMID: 25264267 Free article.

4

Probabilistic expression of spatially varied amino acid dimers into general form of Chou׳s pseudo amino acid composition for protein fold recognition.

Saini H, Raicar G, Sharma A, Lal S, Dehzangi A, Lyons J, Paliwal KK, Imoto S, Miyano S. Saini H, et al. Among authors: dehzangi a. J Theor Biol. 2015 Sep 7;380:291-8. doi: 10.1016/j.jtbi.2015.05.030. Epub 2015 Jun 12. J Theor Biol. 2015. PMID: 26079221

5

Protein fold recognition using HMM-HMM alignment and dynamic programming.

Lyons J, Paliwal KK, Dehzangi A, Heffernan R, Tsunoda T, Sharma A. Lyons J, et al. Among authors: dehzangi a. J Theor Biol. 2016 Mar 21;393:67-74. doi: 10.1016/j.jtbi.2015.12.018. Epub 2016 Jan 19. J Theor Biol. 2016. PMID: 26801876

6

Improving protein fold recognition and structural class prediction accuracies using physicochemical properties of amino acids.

Raicar G, Saini H, Dehzangi A, Lal S, Sharma A. Raicar G, et al. Among authors: dehzangi a. J Theor Biol. 2016 Aug 7;402:117-28. doi: 10.1016/j.jtbi.2016.05.002. Epub 2016 May 7. J Theor Biol. 2016. PMID: 27164998

7

EvoStruct-Sub: An accurate Gram-positive protein subcellular localization predictor using evolutionary and structural features.

Uddin MR, Sharma A, Farid DM, Rahman MM, Dehzangi A, Shatabda S. Uddin MR, et al. Among authors: dehzangi a. J Theor Biol. 2018 Apr 14;443:138-146. doi: 10.1016/j.jtbi.2018.02.002. Epub 2018 Feb 5. J Theor Biol. 2018. PMID: 29421211

8

A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition.

Sharma A, Paliwal KK, Dehzangi A, Lyons J, Imoto S, Miyano S. Sharma A, et al. Among authors: dehzangi a. BMC Bioinformatics. 2013 Jul 24;14:233. doi: 10.1186/1471-2105-14-233. BMC Bioinformatics. 2013. PMID: 23879571 Free PMC article.

9

A combination of feature extraction methods with an ensemble of different classifiers for protein structural class prediction problem.

Dehzangi A, Paliwal K, Sharma A, Dehzangi O, Sattar A. Dehzangi A, et al. Among authors: dehzangi o. IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):564-75. doi: 10.1109/TCBB.2013.65. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24091391

10

Evaluation of sequence features from intrinsically disordered regions for the estimation of protein function.

Sharma A, Dehzangi A, Lyons J, Imoto S, Miyano S, Nakai K, Patil A. Sharma A, et al. Among authors: dehzangi a. PLoS One. 2014 Feb 24;9(2):e89890. doi: 10.1371/journal.pone.0089890. eCollection 2014. PLoS One. 2014. PMID: 24587103 Free PMC article.

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