Wang S - Search Results

1

MRFalign: protein homology detection through alignment of Markov random fields.

Ma J, Wang S, Wang Z, Xu J. Ma J, et al. Among authors: wang z, wang s. PLoS Comput Biol. 2014 Mar 27;10(3):e1003500. doi: 10.1371/journal.pcbi.1003500. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24675572 Free PMC article.

2

Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.

Wang S, Sun S, Li Z, Zhang R, Xu J. Wang S, et al. PLoS Comput Biol. 2017 Jan 5;13(1):e1005324. doi: 10.1371/journal.pcbi.1005324. eCollection 2017 Jan. PLoS Comput Biol. 2017. PMID: 28056090 Free PMC article.

3

Analysis of deep learning methods for blind protein contact prediction in CASP12.

Wang S, Sun S, Xu J. Wang S, et al. Proteins. 2018 Mar;86 Suppl 1(Suppl 1):67-77. doi: 10.1002/prot.25377. Epub 2017 Sep 6. Proteins. 2018. PMID: 28845538 Free PMC article.

4

Analysis of distance-based protein structure prediction by deep learning in CASP13.

Xu J, Wang S. Xu J, et al. Among authors: wang s. Proteins. 2019 Dec;87(12):1069-1081. doi: 10.1002/prot.25810. Epub 2019 Sep 13. Proteins. 2019. PMID: 31471916

5

Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling.

Wang S, Peng J, Xu J. Wang S, et al. Bioinformatics. 2011 Sep 15;27(18):2537-45. doi: 10.1093/bioinformatics/btr432. Epub 2011 Jul 26. Bioinformatics. 2011. PMID: 21791532 Free PMC article.

6

A conditional neural fields model for protein threading.

Ma J, Peng J, Wang S, Xu J. Ma J, et al. Among authors: wang s. Bioinformatics. 2012 Jun 15;28(12):i59-66. doi: 10.1093/bioinformatics/bts213. Bioinformatics. 2012. PMID: 22689779 Free PMC article.

7

Template-based protein structure modeling using the RaptorX web server.

Källberg M, Wang H, Wang S, Peng J, Wang Z, Lu H, Xu J. Källberg M, et al. Among authors: wang h, wang z, wang s. Nat Protoc. 2012 Jul 19;7(8):1511-22. doi: 10.1038/nprot.2012.085. Nat Protoc. 2012. PMID: 22814390 Free PMC article.

8

Protein structure alignment beyond spatial proximity.

Wang S, Ma J, Peng J, Xu J. Wang S, et al. Sci Rep. 2013;3:1448. doi: 10.1038/srep01448. Sci Rep. 2013. PMID: 23486213 Free PMC article.

9

Protein threading using context-specific alignment potential.

Ma J, Wang S, Zhao F, Xu J. Ma J, et al. Among authors: wang s. Bioinformatics. 2013 Jul 1;29(13):i257-65. doi: 10.1093/bioinformatics/btt210. Bioinformatics. 2013. PMID: 23812991 Free PMC article.

10

Algorithms, applications, and challenges of protein structure alignment.

Ma J, Wang S. Ma J, et al. Among authors: wang s. Adv Protein Chem Struct Biol. 2014;94:121-75. doi: 10.1016/B978-0-12-800168-4.00005-6. Adv Protein Chem Struct Biol. 2014. PMID: 24629187

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