Lins RD - Search Results

1

Anionic form of usnic acid promotes lamellar to nonlamellar transition in DPPC and DOPC membranes.

Nadvorny D, da Silva JB, Lins RD. Nadvorny D, et al. Among authors: lins rd. J Phys Chem B. 2014 Apr 10;118(14):3881-6. doi: 10.1021/jp412176f. Epub 2014 Mar 28. J Phys Chem B. 2014. PMID: 24655129

2

Modeling the nanophase structural dynamics of phenylated sulfonated poly ether ether ketone ketone (Ph-SPEEKK) membranes as a function of hydration.

Lins RD, Devanathan R, Dupuis M. Lins RD, et al. J Phys Chem B. 2011 Mar 3;115(8):1817-24. doi: 10.1021/jp110331m. Epub 2011 Feb 3. J Phys Chem B. 2011. PMID: 21291226

3

Conformational variability of organophosphorus hydrolase upon soman and paraoxon binding.

Gomes DE, Lins RD, Pascutti PG, Lei C, Soares TA. Gomes DE, et al. Among authors: lins rd. J Phys Chem B. 2011 Dec 29;115(51):15389-98. doi: 10.1021/jp208787g. Epub 2011 Dec 5. J Phys Chem B. 2011. PMID: 22098575 Free PMC article.

4

IMSPeptider: A computational peptide collision cross-section area calculator based on a novel molecular dynamics simulation protocol.

de Carvalho RV, Lopez-Ferrer D, Guimarães KS, Lins RD. de Carvalho RV, et al. Among authors: lins rd. J Comput Chem. 2013 Jul 30;34(20):1707-18. doi: 10.1002/jcc.23299. Epub 2013 Jun 20. J Comput Chem. 2013. PMID: 23609240

5

Extension and validation of the GROMOS 53A6(GLYC) parameter set for glycoproteins.

Pol-Fachin L, Verli H, Lins RD. Pol-Fachin L, et al. Among authors: lins rd. J Comput Chem. 2014 Nov 5;35(29):2087-95. doi: 10.1002/jcc.23721. Epub 2014 Sep 5. J Comput Chem. 2014. PMID: 25196137

6

Assessing protein conformational sampling and structural stability via de novo design and molecular dynamics simulations.

Cunha KC, Rusu VH, Viana IF, Marques ET, Dhalia R, Lins RD. Cunha KC, et al. Among authors: lins rd. Biopolymers. 2015 Jun;103(6):351-61. doi: 10.1002/bip.22626. Biopolymers. 2015. PMID: 25677872

7

The Effect of Temperature, Cations, and Number of Acyl Chains on the Lamellar to Non-Lamellar Transition in Lipid-A Membranes: A Microscopic View.

Pontes FJ, Rusu VH, Soares TA, Lins RD. Pontes FJ, et al. Among authors: lins rd. J Chem Theory Comput. 2012 Oct 9;8(10):3830-8. doi: 10.1021/ct300084v. Epub 2012 Jun 5. J Chem Theory Comput. 2012. PMID: 26593024

8

An artificial neural network model to predict structure-based protein-protein free energy of binding from Rosetta-calculated properties.

Ferraz MVF, Neto JCS, Lins RD, Teixeira ES. Ferraz MVF, et al. Among authors: lins rd. Phys Chem Chem Phys. 2023 Mar 8;25(10):7257-7267. doi: 10.1039/d2cp05644e. Phys Chem Chem Phys. 2023. PMID: 36810523

9

An improved nucleic acid parameter set for the GROMOS force field.

Soares TA, Hünenberger PH, Kastenholz MA, Kräutler V, Lenz T, Lins RD, Oostenbrink C, van Gunsteren WF. Soares TA, et al. Among authors: lins rd. J Comput Chem. 2005 May;26(7):725-37. doi: 10.1002/jcc.20193. J Comput Chem. 2005. PMID: 15770662

10

Chitosan molecular structure as a function of N-acetylation.

Franca EF, Freitas LC, Lins RD. Franca EF, et al. Among authors: lins rd. Biopolymers. 2011 Jul;95(7):448-60. doi: 10.1002/bip.21602. Epub 2011 Feb 16. Biopolymers. 2011. PMID: 21328576

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