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The binary protein-protein interaction landscape of Escherichia coli.
Rajagopala SV, Sikorski P, Kumar A, Mosca R, Vlasblom J, Arnold R, Franca-Koh J, Pakala SB, Phanse S, Ceol A, Häuser R, Siszler G, Wuchty S, Emili A, Babu M, Aloy P, Pieper R, Uetz P. Rajagopala SV, et al. Among authors: pakala sb. Nat Biotechnol. 2014 Mar;32(3):285-290. doi: 10.1038/nbt.2831. Epub 2014 Feb 23. Nat Biotechnol. 2014. PMID: 24561554 Free PMC article.
Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality.
Budhraja A, Basu A, Gheware A, Abhilash D, Rajagopala S, Pakala S, Sumit M, Ray A, Subramaniam A, Mathur P, Nambirajan A, Kumar S, Gupta R, Wig N, Trikha A, Guleria R, Sarkar C, Gupta I, Jain D. Budhraja A, et al. Dis Model Mech. 2022 May 1;15(5):dmm049572. doi: 10.1242/dmm.049572. Epub 2022 Jun 6. Dis Model Mech. 2022. PMID: 35438176 Free PMC article.
Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3.
Losada L, Pakala SB, Fedorova ND, Joardar V, Shabalina SA, Hostetler J, Pakala SM, Zafar N, Thomas E, Rodriguez-Carres M, Dean R, Vilgalys R, Nierman WC, Cubeta MA. Losada L, et al. Among authors: pakala sb, pakala sm. FEMS Microbiol Lett. 2014 Mar;352(2):165-73. doi: 10.1111/1574-6968.12387. Epub 2014 Feb 17. FEMS Microbiol Lett. 2014. PMID: 24461055
COVID-19 severity from Omicron and Delta SARS-CoV-2 variants.
Wrenn JO, Pakala SB, Vestal G, Shilts MH, Brown HM, Bowen SM, Strickland BA, Williams T, Mallal SA, Jones ID, Schmitz JE, Self WH, Das SR. Wrenn JO, et al. Among authors: pakala sb. Influenza Other Respir Viruses. 2022 Sep;16(5):832-836. doi: 10.1111/irv.12982. Epub 2022 Apr 13. Influenza Other Respir Viruses. 2022. PMID: 35415869 Free PMC article.
Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level.
Leary S, Gaudieri S, Parker MD, Chopra A, James I, Pakala S, Alves E, John M, Lindsey BB, Keeley AJ, Rowland-Jones SL, Swanson MS, Ostrov DA, Bubenik JL, Das SR, Sidney J, Sette A; COVID-19 Genomics UK (COG-UK) consortium; de Silva TI, Phillips E, Mallal S. Leary S, et al. Pathog Immun. 2021 Aug 20;6(2):27-49. doi: 10.20411/pai.v6i2.460. eCollection 2021. Pathog Immun. 2021. PMID: 34541432 Free PMC article.
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability.
Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, Denning DW, Nierman WC. Joardar V, et al. Among authors: pakala sb, pakala s. BMC Genomics. 2012 Dec 12;13:698. doi: 10.1186/1471-2164-13-698. BMC Genomics. 2012. PMID: 23234273 Free PMC article.
Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP.
Cubeta MA, Thomas E, Dean RA, Jabaji S, Neate SM, Tavantzis S, Toda T, Vilgalys R, Bharathan N, Fedorova-Abrams N, Pakala SB, Pakala SM, Zafar N, Joardar V, Losada L, Nierman WC. Cubeta MA, et al. Among authors: pakala sb, pakala sm. Genome Announc. 2014 Oct 30;2(5):e01072-14. doi: 10.1128/genomeA.01072-14. Genome Announc. 2014. PMID: 25359908 Free PMC article.
95 results