Koren S - Search Results

1

Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.

Harhay GP, Murray RW, Lubbers B, Griffin D, Koren S, Phillippy AM, Harhay DM, Bono J, Clawson ML, Heaton MP, Chitko-McKown CG, Smith TP. Harhay GP, et al. Among authors: koren s. Genome Announc. 2014 Feb 13;2(1):e00088-14. doi: 10.1128/genomeA.00088-14. Genome Announc. 2014. PMID: 24526648 Free PMC article.

2

GAGE: A critical evaluation of genome assemblies and assembly algorithms.

Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. Salzberg SL, et al. Among authors: koren s. Genome Res. 2012 Mar;22(3):557-67. doi: 10.1101/gr.131383.111. Epub 2012 Jan 6. Genome Res. 2012. PMID: 22147368 Free PMC article.

3

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.

Treangen TJ, Koren S, Sommer DD, Liu B, Astrovskaya I, Ondov B, Darling AE, Phillippy AM, Pop M. Treangen TJ, et al. Among authors: koren s. Genome Biol. 2013 Jan 15;14(1):R2. doi: 10.1186/gb-2013-14-1-r2. Genome Biol. 2013. PMID: 23320958 Free PMC article.

4

Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle.

Harhay GP, Koren S, Phillippy AM, McVey DS, Kuszak J, Clawson ML, Harhay DM, Heaton MP, Chitko-McKown CG, Smith TP. Harhay GP, et al. Among authors: koren s. Genome Announc. 2013 May 16;1(3):e00188-13. doi: 10.1128/genomeA.00188-13. Genome Announc. 2013. PMID: 23682137 Free PMC article.

5

Reducing assembly complexity of microbial genomes with single-molecule sequencing.

Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM. Koren S, et al. Genome Biol. 2013;14(9):R101. doi: 10.1186/gb-2013-14-9-r101. Genome Biol. 2013. PMID: 24034426 Free PMC article.

6

Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.

Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP. Harhay GP, et al. Among authors: koren s. Genome Announc. 2014 Feb 13;2(1):e00084-14. doi: 10.1128/genomeA.00084-14. Genome Announc. 2014. PMID: 24526647 Free PMC article.

7

Automated ensemble assembly and validation of microbial genomes.

Koren S, Treangen TJ, Hill CM, Pop M, Phillippy AM. Koren S, et al. BMC Bioinformatics. 2014 May 3;15:126. doi: 10.1186/1471-2105-15-126. BMC Bioinformatics. 2014. PMID: 24884846 Free PMC article.

8

Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923.

Treangen TJ, Maybank RA, Enke S, Friss MB, Diviak LF, Karaolis DK, Koren S, Ondov B, Phillippy AM, Bergman NH, Rosovitz MJ. Treangen TJ, et al. Among authors: koren s. Genome Announc. 2014 Nov 6;2(6):e01110-14. doi: 10.1128/genomeA.01110-14. Genome Announc. 2014. PMID: 25377701 Free PMC article.

9

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.

Treangen TJ, Ondov BD, Koren S, Phillippy AM. Treangen TJ, et al. Among authors: koren s. Genome Biol. 2014;15(11):524. doi: 10.1186/s13059-014-0524-x. Genome Biol. 2014. PMID: 25410596 Free PMC article.

10

One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly.

Koren S, Phillippy AM. Koren S, et al. Curr Opin Microbiol. 2015 Feb;23:110-20. doi: 10.1016/j.mib.2014.11.014. Epub 2014 Dec 1. Curr Opin Microbiol. 2015. PMID: 25461581 Free article. Review.

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