Arsuaga J - Search Results

1

Reproducibility of 3D chromatin configuration reconstructions.

Segal MR, Xiong H, Capurso D, Vazquez M, Arsuaga J. Segal MR, et al. Among authors: arsuaga j. Biostatistics. 2014 Jul;15(3):442-56. doi: 10.1093/biostatistics/kxu003. Epub 2014 Feb 11. Biostatistics. 2014. PMID: 24519450 Free PMC article.

2

Novel display of knotted DNA molecules by two-dimensional gel electrophoresis.

Trigueros S, Arsuaga J, Vazquez ME, Sumners DW, Roca J. Trigueros S, et al. Among authors: arsuaga j. Nucleic Acids Res. 2001 Jul 1;29(13):E67-7. doi: 10.1093/nar/29.13.e67. Nucleic Acids Res. 2001. PMID: 11433043 Free PMC article.

3

Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids.

Arsuaga J, Vázquez M, Trigueros S, Sumners D, Roca J. Arsuaga J, et al. Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5373-7. doi: 10.1073/pnas.032095099. Proc Natl Acad Sci U S A. 2002. PMID: 11959991 Free PMC article.

4

Using graph theory to describe and model chromosome aberrations.

Sachs RK, Arsuaga J, Vázquez M, Hlatky L, Hahnfeldt P. Sachs RK, et al. Among authors: arsuaga j. Radiat Res. 2002 Nov;158(5):556-67. doi: 10.1667/0033-7587(2002)158[0556:ugttda]2.0.co;2. Radiat Res. 2002. PMID: 12385633

5

Investigation of viral DNA packaging using molecular mechanics models.

Arsuaga J, Tan RK, Vazquez M, Sumners DW, Harvey SC. Arsuaga J, et al. Biophys Chem. 2002 Dec 10;101-102:475-84. doi: 10.1016/s0301-4622(02)00197-7. Biophys Chem. 2002. PMID: 12488021

6

Chromosome spatial clustering inferred from radiogenic aberrations.

Arsuaga J, Greulich-Bode KM, Vazquez M, Bruckner M, Hahnfeldt P, Brenner DJ, Sachs R, Hlatky L. Arsuaga J, et al. Int J Radiat Biol. 2004 Jul;80(7):507-15. doi: 10.1080/09553000410001723857. Int J Radiat Biol. 2004. PMID: 15360089 Free article.

7

Comparing DNA damage-processing pathways by computer analysis of chromosome painting data.

Levy D, Vazquez M, Cornforth M, Loucas B, Sachs RK, Arsuaga J. Levy D, et al. Among authors: arsuaga j. J Comput Biol. 2004;11(4):626-41. doi: 10.1089/cmb.2004.11.626. J Comput Biol. 2004. PMID: 15579235

8

SCHIP: statistics for chromosome interphase positioning based on interchange data.

Vives S, Loucas B, Vazquez M, Brenner DJ, Sachs RK, Hlatky L, Cornforth M, Arsuaga J. Vives S, et al. Among authors: arsuaga j. Bioinformatics. 2005 Jul 15;21(14):3181-2. doi: 10.1093/bioinformatics/bti470. Epub 2005 May 10. Bioinformatics. 2005. PMID: 15886279

9

DNA knots reveal a chiral organization of DNA in phage capsids.

Arsuaga J, Vazquez M, McGuirk P, Trigueros S, Sumners D, Roca J. Arsuaga J, et al. Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9165-9. doi: 10.1073/pnas.0409323102. Epub 2005 Jun 15. Proc Natl Acad Sci U S A. 2005. PMID: 15958528 Free PMC article.

10

Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases.

Hua X, Nguyen D, Raghavan B, Arsuaga J, Vazquez M. Hua X, et al. Among authors: arsuaga j. Topol Appl. 2007 Apr 1;154(7):1381-1397. doi: 10.1016/j.topol.2006.05.010. Topol Appl. 2007. PMID: 19924260 Free PMC article.

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