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Discovery of human sORF-encoded polypeptides (SEPs) in cell lines and tissue.
Ma J, Ward CC, Jungreis I, Slavoff SA, Schwaid AG, Neveu J, Budnik BA, Kellis M, Saghatelian A. Ma J, et al. Among authors: budnik ba. J Proteome Res. 2014 Mar 7;13(3):1757-65. doi: 10.1021/pr401280w. Epub 2014 Feb 14. J Proteome Res. 2014. PMID: 24490786 Free PMC article.
Synthetic genomes unveil the effects of synonymous recoding.
Nyerges A, Chiappino-Pepe A, Budnik B, Baas-Thomas M, Flynn R, Yan S, Ostrov N, Liu M, Wang M, Zheng Q, Hu F, Chen K, Rudolph A, Chen D, Ahn J, Spencer O, Ayalavarapu V, Tarver A, Harmon-Smith M, Hamilton M, Blaby I, Yoshikuni Y, Hajian B, Jin A, Kintses B, Szamel M, Seregi V, Shen Y, Li Z, Church GM. Nyerges A, et al. bioRxiv [Preprint]. 2024 Jun 16:2024.06.16.599206. doi: 10.1101/2024.06.16.599206. bioRxiv. 2024. PMID: 38915524 Free PMC article. Preprint.
Peptidomic discovery of short open reading frame-encoded peptides in human cells.
Slavoff SA, Mitchell AJ, Schwaid AG, Cabili MN, Ma J, Levin JZ, Karger AD, Budnik BA, Rinn JL, Saghatelian A. Slavoff SA, et al. Among authors: budnik ba. Nat Chem Biol. 2013 Jan;9(1):59-64. doi: 10.1038/nchembio.1120. Epub 2012 Nov 18. Nat Chem Biol. 2013. PMID: 23160002 Free PMC article.
A human microprotein that interacts with the mRNA decapping complex.
D'Lima NG, Ma J, Winkler L, Chu Q, Loh KH, Corpuz EO, Budnik BA, Lykke-Andersen J, Saghatelian A, Slavoff SA. D'Lima NG, et al. Among authors: budnik ba. Nat Chem Biol. 2017 Feb;13(2):174-180. doi: 10.1038/nchembio.2249. Epub 2016 Dec 5. Nat Chem Biol. 2017. PMID: 27918561 Free PMC article.
National Cancer Institute Think-Tank Meeting Report on Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant Lesions.
Kagan J, Moritz RL, Mazurchuk R, Lee JH, Kharchenko PV, Rozenblatt-Rosen O, Ruppin E, Edfors F, Ginty F, Goltsev Y, Wells JA, LaCava J, Riesterer JL, Germain RN, Shi T, Chee MS, Budnik BA, Yates JR 3rd, Chait BT, Moffitt JR, Smith RD, Srivastava S. Kagan J, et al. Among authors: budnik ba. J Proteome Res. 2020 May 1;19(5):1900-1912. doi: 10.1021/acs.jproteome.0c00021. Epub 2020 Apr 2. J Proteome Res. 2020. PMID: 32163288
67 results