Nielsen M - Search Results

1

Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment.

Carrasco Pro S, Zimic M, Nielsen M. Carrasco Pro S, et al. Among authors: nielsen m. Tissue Antigens. 2014 Feb;83(2):94-100. doi: 10.1111/tan.12292. Tissue Antigens. 2014. PMID: 24447175 Free PMC article.

2

Automated benchmarking of peptide-MHC class I binding predictions.

Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M. Trolle T, et al. Among authors: nielsen m. Bioinformatics. 2015 Jul 1;31(13):2174-81. doi: 10.1093/bioinformatics/btv123. Epub 2015 Feb 25. Bioinformatics. 2015. PMID: 25717196 Free PMC article.

3

Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification.

Andreatta M, Karosiene E, Rasmussen M, Stryhn A, Buus S, Nielsen M. Andreatta M, et al. Among authors: nielsen m. Immunogenetics. 2015 Nov;67(11-12):641-50. doi: 10.1007/s00251-015-0873-y. Epub 2015 Sep 29. Immunogenetics. 2015. PMID: 26416257 Free PMC article.

4

Improved pan-specific prediction of MHC class I peptide binding using a novel receptor clustering data partitioning strategy.

Mattsson AH, Kringelum JV, Garde C, Nielsen M. Mattsson AH, et al. Among authors: nielsen m. HLA. 2016 Dec;88(6):287-292. doi: 10.1111/tan.12911. Epub 2016 Oct 20. HLA. 2016. PMID: 27762504

5

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data.

Jurtz V, Paul S, Andreatta M, Marcatili P, Peters B, Nielsen M. Jurtz V, et al. Among authors: nielsen m. J Immunol. 2017 Nov 1;199(9):3360-3368. doi: 10.4049/jimmunol.1700893. Epub 2017 Oct 4. J Immunol. 2017. PMID: 28978689 Free PMC article.

6

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

Nielsen M, Lundegaard C, Worning P, Hvid CS, Lamberth K, Buus S, Brunak S, Lund O. Nielsen M, et al. Bioinformatics. 2004 Jun 12;20(9):1388-97. doi: 10.1093/bioinformatics/bth100. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962912

7

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method.

Nielsen M, Lundegaard C, Lund O. Nielsen M, et al. BMC Bioinformatics. 2007 Jul 4;8:238. doi: 10.1186/1471-2105-8-238. BMC Bioinformatics. 2007. PMID: 17608956 Free PMC article.

8

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11.

Lundegaard C, Lamberth K, Harndahl M, Buus S, Lund O, Nielsen M. Lundegaard C, et al. Among authors: nielsen m. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W509-12. doi: 10.1093/nar/gkn202. Epub 2008 May 7. Nucleic Acids Res. 2008. PMID: 18463140 Free PMC article.

9

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods.

Zhang H, Lundegaard C, Nielsen M. Zhang H, et al. Among authors: nielsen m. Bioinformatics. 2009 Jan 1;25(1):83-9. doi: 10.1093/bioinformatics/btn579. Epub 2008 Nov 7. Bioinformatics. 2009. PMID: 18996943 Free PMC article.

10

NetMHCpan, a method for MHC class I binding prediction beyond humans.

Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, Lund O, Buus S, Nielsen M. Hoof I, et al. Among authors: nielsen m. Immunogenetics. 2009 Jan;61(1):1-13. doi: 10.1007/s00251-008-0341-z. Epub 2008 Nov 12. Immunogenetics. 2009. PMID: 19002680 Free PMC article.

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