Solernou A - Search Results

1

Blind prediction of interfacial water positions in CAPRI.

Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Praneeth Kilambi K, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C, Wodak SJ. Lensink MF, et al. Among authors: solernou a. Proteins. 2014 Apr;82(4):620-32. doi: 10.1002/prot.24439. Epub 2013 Nov 23. Proteins. 2014. PMID: 24155158 Free PMC article.

2

Prediction and scoring of docking poses with pyDock.

Grosdidier S, Pons C, Solernou A, Fernández-Recio J. Grosdidier S, et al. Among authors: solernou a. Proteins. 2007 Dec 1;69(4):852-8. doi: 10.1002/prot.21796. Proteins. 2007. PMID: 17876821

3

Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges.

Pallara C, Jiménez-García B, Pérez-Cano L, Romero-Durana M, Solernou A, Grosdidier S, Pons C, Moal IH, Fernandez-Recio J. Pallara C, et al. Among authors: solernou a. Proteins. 2013 Dec;81(12):2192-200. doi: 10.1002/prot.24387. Epub 2013 Oct 17. Proteins. 2013. PMID: 23934865

4

Present and future challenges and limitations in protein-protein docking.

Pons C, Grosdidier S, Solernou A, Pérez-Cano L, Fernández-Recio J. Pons C, et al. Among authors: solernou a. Proteins. 2010 Jan;78(1):95-108. doi: 10.1002/prot.22564. Proteins. 2010. PMID: 19731373

5

Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.

Pons C, Solernou A, Perez-Cano L, Grosdidier S, Fernandez-Recio J. Pons C, et al. Among authors: solernou a. Proteins. 2010 Nov 15;78(15):3182-8. doi: 10.1002/prot.22773. Proteins. 2010. PMID: 20602351

6

Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation.

Solernou A, Fernandez-Recio J. Solernou A, et al. BMC Bioinformatics. 2010 Jun 28;11:352. doi: 10.1186/1471-2105-11-352. BMC Bioinformatics. 2010. PMID: 20584304 Free PMC article.

7

Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials.

Pérez-Cano L, Solernou A, Pons C, Fernández-Recio J. Pérez-Cano L, et al. Among authors: solernou a. Pac Symp Biocomput. 2010:293-301. doi: 10.1142/9789814295291_0031. Pac Symp Biocomput. 2010. PMID: 19908381 Free article.

8

pyDockCG: new coarse-grained potential for protein-protein docking.

Solernou A, Fernandez-Recio J. Solernou A, et al. J Phys Chem B. 2011 May 19;115(19):6032-9. doi: 10.1021/jp112292b. Epub 2011 Apr 21. J Phys Chem B. 2011. PMID: 21506617

9

Efficient Relaxation of Protein-Protein Interfaces by Discrete Molecular Dynamics Simulations.

Emperador A, Solernou A, Sfriso P, Pons C, Gelpi JL, Fernandez-Recio J, Orozco M. Emperador A, et al. Among authors: solernou a. J Chem Theory Comput. 2013 Feb 12;9(2):1222-9. doi: 10.1021/ct301039e. Epub 2012 Dec 28. J Chem Theory Comput. 2013. PMID: 26588765

10

Fluctuating Finite Element Analysis (FFEA): A continuum mechanics software tool for mesoscale simulation of biomolecules.

Solernou A, Hanson BS, Richardson RA, Welch R, Read DJ, Harlen OG, Harris SA. Solernou A, et al. PLoS Comput Biol. 2018 Mar 23;14(3):e1005897. doi: 10.1371/journal.pcbi.1005897. eCollection 2018 Mar. PLoS Comput Biol. 2018. PMID: 29570700 Free PMC article.

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