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IMG/M 4 version of the integrated metagenome comparative analysis system.
Markowitz VM, Chen IM, Chu K, Szeto E, Palaniappan K, Pillay M, Ratner A, Huang J, Pagani I, Tringe S, Huntemann M, Billis K, Varghese N, Tennessen K, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC. Markowitz VM, et al. Among authors: tringe s. Nucleic Acids Res. 2014 Jan;42(Database issue):D568-73. doi: 10.1093/nar/gkt919. Epub 2013 Oct 16. Nucleic Acids Res. 2014. PMID: 24136997 Free PMC article.
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.
Warnecke F, Luginbühl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernández M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR. Warnecke F, et al. Nature. 2007 Nov 22;450(7169):560-5. doi: 10.1038/nature06269. Nature. 2007. PMID: 18033299 Free article.
A call for standardized classification of metagenome projects.
Ivanova N, Tringe SG, Liolios K, Liu WT, Morrison N, Hugenholtz P, Kyrpides NC. Ivanova N, et al. Environ Microbiol. 2010 Jul;12(7):1803-5. doi: 10.1111/j.1462-2920.2010.02270.x. Environ Microbiol. 2010. PMID: 20653767 Free article. Review. No abstract available.
Metagenomes from two microbial consortia associated with Santa Barbara seep oil.
Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, del Rio TG, Pati A, Jansson JR, Gilbert JA, Tringe SG, Lorenson TD, Hess M. Hawley ER, et al. Mar Genomics. 2014 Dec;18 Pt B:97-9. doi: 10.1016/j.margen.2014.06.003. Epub 2014 Jun 20. Mar Genomics. 2014. PMID: 24958360
Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M. Hawley ER, et al. Among authors: tringe s. Stand Genomic Sci. 2014 Jan 2;9(3):1259-74. doi: 10.4056/sigs.5029016. eCollection 2014 Jun 15. Stand Genomic Sci. 2014. PMID: 25197496 Free PMC article.
187 results