Thomas-Chollier M - Search Results

1

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.

Thomas-Chollier M, Watson LC, Cooper SB, Pufall MA, Liu JS, Borzym K, Vingron M, Yamamoto KR, Meijsing SH. Thomas-Chollier M, et al. Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17826-31. doi: 10.1073/pnas.1316235110. Epub 2013 Oct 14. Proc Natl Acad Sci U S A. 2013. PMID: 24127590 Free PMC article.

2

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.

Love MI, Huska MR, Jurk M, Schöpflin R, Starick SR, Schwahn K, Cooper SB, Yamamoto KR, Thomas-Chollier M, Vingron M, Meijsing SH. Love MI, et al. Nucleic Acids Res. 2017 Feb 28;45(4):1805-1819. doi: 10.1093/nar/gkw1163. Nucleic Acids Res. 2017. PMID: 27903902 Free PMC article.

3

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.

Schöne S, Jurk M, Helabad MB, Dror I, Lebars I, Kieffer B, Imhof P, Rohs R, Vingron M, Thomas-Chollier M, Meijsing SH. Schöne S, et al. Nat Commun. 2016 Sep 1;7:12621. doi: 10.1038/ncomms12621. Nat Commun. 2016. PMID: 27581526 Free PMC article.

4

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors.

Starick SR, Ibn-Salem J, Jurk M, Hernandez C, Love MI, Chung HR, Vingron M, Thomas-Chollier M, Meijsing SH. Starick SR, et al. Genome Res. 2015 Jun;25(6):825-35. doi: 10.1101/gr.185157.114. Epub 2015 Feb 26. Genome Res. 2015. PMID: 25720775 Free PMC article.

5

Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements.

Telorac J, Prykhozhij SV, Schöne S, Meierhofer D, Sauer S, Thomas-Chollier M, Meijsing SH. Telorac J, et al. Nucleic Acids Res. 2016 Jul 27;44(13):6142-56. doi: 10.1093/nar/gkw203. Epub 2016 Mar 25. Nucleic Acids Res. 2016. PMID: 27016732 Free PMC article.

6

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise.

Schöne S, Bothe M, Einfeldt E, Borschiwer M, Benner P, Vingron M, Thomas-Chollier M, Meijsing SH. Schöne S, et al. PLoS Genet. 2018 Nov 14;14(11):e1007793. doi: 10.1371/journal.pgen.1007793. eCollection 2018 Nov. PLoS Genet. 2018. PMID: 30427832 Free PMC article.

7

Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs.

Thomas-Chollier M, Hufton A, Heinig M, O'Keeffe S, Masri NE, Roider HG, Manke T, Vingron M. Thomas-Chollier M, et al. Nat Protoc. 2011 Nov 3;6(12):1860-9. doi: 10.1038/nprot.2011.409. Nat Protoc. 2011. PMID: 22051799

8

Corrigendum: Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.

Schöne S, Jurk M, Helabad MB, Dror I, Lebars I, Kieffer B, Imhof P, Rohs R, Vingron M, Thomas-Chollier M, Meijsing SH. Schöne S, et al. Nat Commun. 2016 Nov 22;7:13784. doi: 10.1038/ncomms13784. Nat Commun. 2016. PMID: 27873998 Free PMC article. No abstract available.

9

Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.

Collombet S, van Oevelen C, Sardina Ortega JL, Abou-Jaoudé W, Di Stefano B, Thomas-Chollier M, Graf T, Thieffry D. Collombet S, et al. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5792-5799. doi: 10.1073/pnas.1610622114. Proc Natl Acad Sci U S A. 2017. PMID: 28584084 Free PMC article.

10

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets.

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. Thomas-Chollier M, et al. Nucleic Acids Res. 2012 Feb;40(4):e31. doi: 10.1093/nar/gkr1104. Epub 2011 Dec 8. Nucleic Acids Res. 2012. PMID: 22156162 Free PMC article.

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