Agari Y - Search Results

1

Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus.

Staals RHJ, Agari Y, Maki-Yonekura S, Zhu Y, Taylor DW, van Duijn E, Barendregt A, Vlot M, Koehorst JJ, Sakamoto K, Masuda A, Dohmae N, Schaap PJ, Doudna JA, Heck AJR, Yonekura K, van der Oost J, Shinkai A. Staals RHJ, et al. Among authors: agari y. Mol Cell. 2013 Oct 10;52(1):135-145. doi: 10.1016/j.molcel.2013.09.013. Mol Cell. 2013. PMID: 24119403 Free PMC article.

2

Transcription profile of Thermus thermophilus CRISPR systems after phage infection.

Agari Y, Sakamoto K, Tamakoshi M, Oshima T, Kuramitsu S, Shinkai A. Agari Y, et al. J Mol Biol. 2010 Jan 15;395(2):270-81. doi: 10.1016/j.jmb.2009.10.057. Epub 2009 Nov 3. J Mol Biol. 2010. PMID: 19891975

3

Functional identification of an anti-sigmaE factor from Thermus thermophilus HB8.

Sakamoto K, Agari Y, Yokoyama S, Kuramitsu S, Shinkai A. Sakamoto K, et al. Among authors: agari y. Gene. 2008 Nov 1;423(2):153-9. doi: 10.1016/j.gene.2008.07.012. Epub 2008 Jul 18. Gene. 2008. PMID: 18682280

4

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Agari Y, Kashihara A, Yokoyama S, Kuramitsu S, Shinkai A. Agari Y, et al. Mol Microbiol. 2008 Oct;70(1):60-75. doi: 10.1111/j.1365-2958.2008.06388.x. Epub 2008 Aug 11. Mol Microbiol. 2008. PMID: 18699868 Free article.

5

X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8.

Agari Y, Yokoyama S, Kuramitsu S, Shinkai A. Agari Y, et al. Proteins. 2008 Dec;73(4):1063-7. doi: 10.1002/prot.22224. Proteins. 2008. PMID: 18798563 No abstract available.

6

X-ray crystal structure of a CRISPR-associated RAMP module [corrected] Cmr5 protein [corrected] from Thermus thermophilus HB8.

Sakamoto K, Agari Y, Agari K, Yokoyama S, Kuramitsu S, Shinkai A. Sakamoto K, et al. Among authors: agari y, agari k. Proteins. 2009 May 1;75(2):528-32. doi: 10.1002/prot.22358. Proteins. 2009. PMID: 19173314 No abstract available.

7

Structure of D-alanine-D-alanine ligase from Thermus thermophilus HB8: cumulative conformational change and enzyme-ligand interactions.

Kitamura Y, Ebihara A, Agari Y, Shinkai A, Hirotsu K, Kuramitsu S. Kitamura Y, et al. Among authors: agari y. Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1098-106. doi: 10.1107/S0907444909029710. Epub 2009 Sep 16. Acta Crystallogr D Biol Crystallogr. 2009. PMID: 19770507 Free PMC article.

8

Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8.

Sakamoto K, Agari Y, Agari K, Kuramitsu S, Shinkai A. Sakamoto K, et al. Among authors: agari y, agari k. Microbiology (Reading). 2010 Jul;156(Pt 7):1993-2005. doi: 10.1099/mic.0.037382-0. Epub 2010 Apr 15. Microbiology (Reading). 2010. PMID: 20395270 Free article.

9

Identification of novel genes regulated by the oxidative stress-responsive transcriptional activator SdrP in Thermus thermophilus HB8.

Agari Y, Kuramitsu S, Shinkai A. Agari Y, et al. FEMS Microbiol Lett. 2010 Dec;313(2):127-34. doi: 10.1111/j.1574-6968.2010.02133.x. Epub 2010 Nov 5. FEMS Microbiol Lett. 2010. PMID: 21054499

10

TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation.

Agari Y, Agari K, Sakamoto K, Kuramitsu S, Shinkai A. Agari Y, et al. Among authors: agari k. Microbiology (Reading). 2011 Jun;157(Pt 6):1589-1601. doi: 10.1099/mic.0.048017-0. Epub 2011 Feb 24. Microbiology (Reading). 2011. PMID: 21349973 Free article.

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