Darst RP - Search Results

1

Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastoma.

Nabilsi NH, Deleyrolle LP, Darst RP, Riva A, Reynolds BA, Kladde MP. Nabilsi NH, et al. Among authors: darst rp. Genome Res. 2014 Feb;24(2):329-39. doi: 10.1101/gr.161737.113. Epub 2013 Oct 8. Genome Res. 2014. PMID: 24105770 Free PMC article.

2

Simultaneous single-molecule mapping of protein-DNA interactions and DNA methylation by MAPit.

Pardo CE, Darst RP, Nabilsi NH, Delmas AL, Kladde MP. Pardo CE, et al. Among authors: darst rp. Curr Protoc Mol Biol. 2011 Jul;Chapter 21:Unit 21.22. doi: 10.1002/0471142727.mb2122s95. Curr Protoc Mol Biol. 2011. PMID: 21732317 Free PMC article.

3

Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit.

Darst RP, Pardo CE, Pondugula S, Gangaraju VK, Nabilsi NH, Bartholomew B, Kladde MP. Darst RP, et al. Methods Mol Biol. 2012;833:125-41. doi: 10.1007/978-1-61779-477-3_9. Methods Mol Biol. 2012. PMID: 22183592

4

DNA methyltransferase accessibility protocol for individual templates by deep sequencing.

Darst RP, Nabilsi NH, Pardo CE, Riva A, Kladde MP. Darst RP, et al. Methods Enzymol. 2012;513:185-204. doi: 10.1016/B978-0-12-391938-0.00008-2. Methods Enzymol. 2012. PMID: 22929770 Free PMC article.

5

Epigenetic diversity of Kaposi's sarcoma-associated herpesvirus.

Darst RP, Haecker I, Pardo CE, Renne R, Kladde MP. Darst RP, et al. Nucleic Acids Res. 2013 Mar 1;41(5):2993-3009. doi: 10.1093/nar/gkt033. Epub 2013 Jan 29. Nucleic Acids Res. 2013. PMID: 23361465 Free PMC article.

6

Integrated DNA methylation and chromatin structural analysis at single-molecule resolution.

Pardo CE, Nabilsi NH, Darst RP, Kladde MP. Pardo CE, et al. Among authors: darst rp. Methods Mol Biol. 2015;1288:123-41. doi: 10.1007/978-1-4939-2474-5_9. Methods Mol Biol. 2015. PMID: 25827879

7

Bisulfite sequencing of DNA.

Darst RP, Pardo CE, Ai L, Brown KD, Kladde MP. Darst RP, et al. Curr Protoc Mol Biol. 2010 Jul;Chapter 7:Unit 7.9.1-17. doi: 10.1002/0471142727.mb0709s91. Curr Protoc Mol Biol. 2010. PMID: 20583099 Free PMC article.

8

MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects.

Pardo CE, Carr IM, Hoffman CJ, Darst RP, Markham AF, Bonthron DT, Kladde MP. Pardo CE, et al. Among authors: darst rp. Nucleic Acids Res. 2011 Jan;39(1):e5. doi: 10.1093/nar/gkq716. Epub 2010 Oct 19. Nucleic Acids Res. 2011. PMID: 20959287 Free PMC article.

9

WIF1 is a frequent target for epigenetic silencing in squamous cell carcinoma of the cervix.

Delmas AL, Riggs BM, Pardo CE, Dyer LM, Darst RP, Izumchenko EG, Monroe M, Hakam A, Kladde MP, Siegel EM, Brown KD. Delmas AL, et al. Among authors: darst rp. Carcinogenesis. 2011 Nov;32(11):1625-33. doi: 10.1093/carcin/bgr193. Epub 2011 Aug 26. Carcinogenesis. 2011. PMID: 21873353 Free PMC article.

10

High Fractional Occupancy of a Tandem Maf Recognition Element and Its Role in Long-Range β-Globin Gene Regulation.

Stees JR, Hossain MA, Sunose T, Kudo Y, Pardo CE, Nabilsi NH, Darst RP, Poudyal R, Igarashi K, Huang S, Kladde MP, Bungert J. Stees JR, et al. Among authors: darst rp. Mol Cell Biol. 2015 Oct 26;36(2):238-50. doi: 10.1128/MCB.00723-15. Print 2016 Jan 15. Mol Cell Biol. 2015. PMID: 26503787 Free PMC article.

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