Bandyopadhyay S - Search Results

1

Reformulated Kemeny optimal aggregation with application in consensus ranking of microRNA targets.

Sengupta D, Pyne A, Maulik U, Bandyopadhyay S. Sengupta D, et al. Among authors: bandyopadhyay s. IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):742-51. doi: 10.1109/TCBB.2013.74. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24091406

2

Active site driven ligand design: an evolutionary approach.

Bandyopadhyay S, Bagchi A, Maulik U. Bandyopadhyay S, et al. J Bioinform Comput Biol. 2005 Oct;3(5):1053-70. doi: 10.1142/s021972000500148x. J Bioinform Comput Biol. 2005. PMID: 16278947

3

An improved algorithm for clustering gene expression data.

Bandyopadhyay S, Mukhopadhyay A, Maulik U. Bandyopadhyay S, et al. Bioinformatics. 2007 Nov 1;23(21):2859-65. doi: 10.1093/bioinformatics/btm418. Epub 2007 Aug 25. Bioinformatics. 2007. PMID: 17720981

4

Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.

Maulik U, Mukhopadhyay A, Bandyopadhyay S. Maulik U, et al. Among authors: bandyopadhyay s. BMC Bioinformatics. 2009 Jan 20;10:27. doi: 10.1186/1471-2105-10-27. BMC Bioinformatics. 2009. PMID: 19154590 Free PMC article.

5

Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.

Ray SS, Bandyopadhyay S, Pal SK. Ray SS, et al. Among authors: bandyopadhyay s. IEEE Trans Biomed Eng. 2009 Feb;56(2):229-36. doi: 10.1109/TBME.2008.2005955. Epub 2008 Sep 30. IEEE Trans Biomed Eng. 2009. PMID: 19272921

6

Finding multiple coherent biclusters in microarray data using variable string length multiobjective genetic algorithm.

Maulik U, Mukhopadhyay A, Bandyopadhyay S. Maulik U, et al. Among authors: bandyopadhyay s. IEEE Trans Inf Technol Biomed. 2009 Nov;13(6):969-75. doi: 10.1109/TITB.2009.2017527. Epub 2009 Mar 16. IEEE Trans Inf Technol Biomed. 2009. PMID: 19304489

7

A parallel pairwise local sequence alignment algorithm.

Bandyopadhyay S, Mitra R. Bandyopadhyay S, et al. IEEE Trans Nanobioscience. 2009 Jun;8(2):139-46. doi: 10.1109/TNB.2009.2019642. Epub 2009 Apr 10. IEEE Trans Nanobioscience. 2009. PMID: 19366648

8

Analyzing miRNA co-expression networks to explore TF-miRNA regulation.

Bandyopadhyay S, Bhattacharyya M. Bandyopadhyay S, et al. BMC Bioinformatics. 2009 May 28;10:163. doi: 10.1186/1471-2105-10-163. BMC Bioinformatics. 2009. PMID: 19476620 Free PMC article.

9

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.

Bandyopadhyay S, Mitra R. Bandyopadhyay S, et al. Bioinformatics. 2009 Oct 15;25(20):2625-31. doi: 10.1093/bioinformatics/btp503. Epub 2009 Aug 19. Bioinformatics. 2009. PMID: 19692556

10

A novel coherence measure for discovering scaling biclusters from gene expression data.

Mukhopadhyay A, Maulik U, Bandyopadhyay S. Mukhopadhyay A, et al. Among authors: bandyopadhyay s. J Bioinform Comput Biol. 2009 Oct;7(5):853-68. doi: 10.1142/s0219720009004370. J Bioinform Comput Biol. 2009. PMID: 19785049

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