Fuchs JE - Search Results

1

Specificity of a protein-protein interface: local dynamics direct substrate recognition of effector caspases.

Fuchs JE, von Grafenstein S, Huber RG, Wallnoefer HG, Liedl KR. Fuchs JE, et al. Proteins. 2014 Apr;82(4):546-55. doi: 10.1002/prot.24417. Epub 2013 Oct 19. Proteins. 2014. PMID: 24085488 Free PMC article.

2

Dynamic regulation of phenylalanine hydroxylase by simulated redox manipulation.

Fuchs JE, Huber RG, von Grafenstein S, Wallnoefer HG, Spitzer GM, Fuchs D, Liedl KR. Fuchs JE, et al. Among authors: fuchs d. PLoS One. 2012;7(12):e53005. doi: 10.1371/journal.pone.0053005. Epub 2012 Dec 31. PLoS One. 2012. PMID: 23300845 Free PMC article.

3

Cleavage entropy as quantitative measure of protease specificity.

Fuchs JE, von Grafenstein S, Huber RG, Margreiter MA, Spitzer GM, Wallnoefer HG, Liedl KR. Fuchs JE, et al. PLoS Comput Biol. 2013 Apr;9(4):e1003007. doi: 10.1371/journal.pcbi.1003007. Epub 2013 Apr 18. PLoS Comput Biol. 2013. PMID: 23637583 Free PMC article.

4

Substrate-driven mapping of the degradome by comparison of sequence logos.

Fuchs JE, von Grafenstein S, Huber RG, Kramer C, Liedl KR. Fuchs JE, et al. PLoS Comput Biol. 2013;9(11):e1003353. doi: 10.1371/journal.pcbi.1003353. Epub 2013 Nov 14. PLoS Comput Biol. 2013. PMID: 24244149 Free PMC article.

5

Interface dynamics explain assembly dependency of influenza neuraminidase catalytic activity.

von Grafenstein S, Wallnoefer HG, Kirchmair J, Fuchs JE, Huber RG, Schmidtke M, Sauerbrei A, Rollinger JM, Liedl KR. von Grafenstein S, et al. Among authors: fuchs je. J Biomol Struct Dyn. 2015;33(1):104-20. doi: 10.1080/07391102.2013.855142. Epub 2013 Nov 27. J Biomol Struct Dyn. 2015. PMID: 24279589 Free PMC article.

6

Dynamics Govern Specificity of a Protein-Protein Interface: Substrate Recognition by Thrombin.

Fuchs JE, Huber RG, Waldner BJ, Kahler U, von Grafenstein S, Kramer C, Liedl KR. Fuchs JE, et al. PLoS One. 2015 Oct 23;10(10):e0140713. doi: 10.1371/journal.pone.0140713. eCollection 2015. PLoS One. 2015. PMID: 26496636 Free PMC article.

7

Independent Metrics for Protein Backbone and Side-Chain Flexibility: Time Scales and Effects of Ligand Binding.

Fuchs JE, Waldner BJ, Huber RG, von Grafenstein S, Kramer C, Liedl KR. Fuchs JE, et al. J Chem Theory Comput. 2015 Mar 10;11(3):851-60. doi: 10.1021/ct500633u. Epub 2015 Feb 24. J Chem Theory Comput. 2015. PMID: 26579739

8

Quantitative Correlation of Conformational Binding Enthalpy with Substrate Specificity of Serine Proteases.

Waldner BJ, Fuchs JE, Huber RG, von Grafenstein S, Schauperl M, Kramer C, Liedl KR. Waldner BJ, et al. Among authors: fuchs je. J Phys Chem B. 2016 Jan 21;120(2):299-308. doi: 10.1021/acs.jpcb.5b10637. Epub 2016 Jan 11. J Phys Chem B. 2016. PMID: 26709959 Free PMC article.

9

Determinants of Macromolecular Specificity from Proteomics-Derived Peptide Substrate Data.

Fuchs JE, Schilling O, Liedl KR. Fuchs JE, et al. Curr Protein Pept Sci. 2017;18(9):905-913. doi: 10.2174/1389203717666160724211231. Curr Protein Pept Sci. 2017. PMID: 27455965 Free PMC article. Review.

10

An unexpected switch in peptide binding mode: from simulation to substrate specificity.

Kahler U, Fuchs JE, Goettig P, Liedl KR. Kahler U, et al. Among authors: fuchs je. J Biomol Struct Dyn. 2018 Nov;36(15):4072-4084. doi: 10.1080/07391102.2017.1407674. Epub 2018 Jan 31. J Biomol Struct Dyn. 2018. PMID: 29210603 Free PMC article.

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