Pagnani A - Search Results

1

Inter-individual variation in nucleotide excision repair pathway is modulated by non-synonymous polymorphisms in ERCC4 and MBD4 genes.

Allione A, Guarrera S, Russo A, Ricceri F, Purohit R, Pagnani A, Rosa F, Polidoro S, Voglino F, Matullo G. Allione A, et al. Among authors: pagnani a. Mutat Res. 2013 Nov-Dec;751-752:49-54. doi: 10.1016/j.mrfmmm.2013.08.005. Epub 2013 Sep 1. Mutat Res. 2013. PMID: 24004570

2

Modelling Competing Endogenous RNA Networks.

Bosia C, Pagnani A, Zecchina R. Bosia C, et al. Among authors: pagnani a. PLoS One. 2013 Jun 26;8(6):e66609. doi: 10.1371/journal.pone.0066609. Print 2013. PLoS One. 2013. PMID: 23840508 Free PMC article.

3

Multisurface coding simulations of the restricted solid-on-solid model in four dimensions.

Pagnani A, Parisi G. Pagnani A, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jan;87(1):010102. doi: 10.1103/PhysRevE.87.010102. Epub 2013 Jan 14. Phys Rev E Stat Nonlin Soft Matter Phys. 2013. PMID: 23410269 Free article.

4

Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp Operon.

Feinauer C, Szurmant H, Weigt M, Pagnani A. Feinauer C, et al. Among authors: pagnani a. PLoS One. 2016 Feb 16;11(2):e0149166. doi: 10.1371/journal.pone.0149166. eCollection 2016. PLoS One. 2016. PMID: 26882169 Free PMC article.

5

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.

Gueudré T, Baldassi C, Zamparo M, Weigt M, Pagnani A. Gueudré T, et al. Among authors: pagnani a. Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12186-12191. doi: 10.1073/pnas.1607570113. Epub 2016 Oct 11. Proc Natl Acad Sci U S A. 2016. PMID: 27729520 Free PMC article.

6

RNAs competing for microRNAs mutually influence their fluctuations in a highly non-linear microRNA-dependent manner in single cells.

Bosia C, Sgrò F, Conti L, Baldassi C, Brusa D, Cavallo F, Cunto FD, Turco E, Pagnani A, Zecchina R. Bosia C, et al. Among authors: pagnani a. Genome Biol. 2017 Feb 20;18(1):37. doi: 10.1186/s13059-017-1162-x. Genome Biol. 2017. PMID: 28219439 Free PMC article.

7

Core percolation and onset of complexity in boolean networks.

Correale L, Leone M, Pagnani A, Weigt M, Zecchina R. Correale L, et al. Among authors: pagnani a. Phys Rev Lett. 2006 Jan 13;96(1):018101. doi: 10.1103/PhysRevLett.96.018101. Epub 2006 Jan 4. Phys Rev Lett. 2006. PMID: 16486521

8

Kinetic Modelling of Competition and Depletion of Shared miRNAs by Competing Endogenous RNAs.

Martirosyan A, Del Giudice M, Bena CE, Pagnani A, Bosia C, De Martino A. Martirosyan A, et al. Among authors: pagnani a. Methods Mol Biol. 2019;1912:367-409. doi: 10.1007/978-1-4939-8982-9_15. Methods Mol Biol. 2019. PMID: 30635902 Review.

9

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Bailly-Bechet M, et al. Among authors: pagnani a. BMC Bioinformatics. 2010 Jun 29;11:355. doi: 10.1186/1471-2105-11-355. BMC Bioinformatics. 2010. PMID: 20587029 Free PMC article.

10

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments.

Ala U, Karreth FA, Bosia C, Pagnani A, Taulli R, Léopold V, Tay Y, Provero P, Zecchina R, Pandolfi PP. Ala U, et al. Among authors: pagnani a. Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7154-9. doi: 10.1073/pnas.1222509110. Epub 2013 Mar 27. Proc Natl Acad Sci U S A. 2013. PMID: 23536298 Free PMC article.

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