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Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.
Jones KA, Kim PD, Patel BB, Kelsen SG, Braverman A, Swinton DJ, Gafken PR, Jones LA, Lane WS, Neveu JM, Leung HE, Shaffer SA, Leszyk JD, Stanley BA, Fox TE, Stanley A, Hall MJ, Hampel H, South CD, de la Chapelle A, Burt RW, Jones DA, Kopelovich L, Yeung AT. Jones KA, et al. Among authors: gafken pr. J Proteome Res. 2013 Oct 4;12(10):4351-65. doi: 10.1021/pr400307u. Epub 2013 Sep 19. J Proteome Res. 2013. PMID: 24004147 Free PMC article.
A targeted proteomics-based pipeline for verification of biomarkers in plasma.
Whiteaker JR, Lin C, Kennedy J, Hou L, Trute M, Sokal I, Yan P, Schoenherr RM, Zhao L, Voytovich UJ, Kelly-Spratt KS, Krasnoselsky A, Gafken PR, Hogan JM, Jones LA, Wang P, Amon L, Chodosh LA, Nelson PS, McIntosh MW, Kemp CJ, Paulovich AG. Whiteaker JR, et al. Among authors: gafken pr. Nat Biotechnol. 2011 Jun 19;29(7):625-34. doi: 10.1038/nbt.1900. Nat Biotechnol. 2011. PMID: 21685906 Free PMC article.
Internal Standard Triggered-Parallel Reaction Monitoring Mass Spectrometry Enables Multiplexed Quantification of Candidate Biomarkers in Plasma.
Kennedy JJ, Whiteaker JR, Ivey RG, Burian A, Chowdhury S, Tsai CF, Liu T, Lin C, Murillo OD, Lundeen RA, Jones LA, Gafken PR, Longton G, Rodland KD, Skates SJ, Landua J, Wang P, Lewis MT, Paulovich AG. Kennedy JJ, et al. Among authors: gafken pr. Anal Chem. 2022 Jul 12;94(27):9540-9547. doi: 10.1021/acs.analchem.1c04382. Epub 2022 Jun 29. Anal Chem. 2022. PMID: 35767427 Free PMC article.
The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.
Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB. Klimek J, et al. Among authors: gafken pr. J Proteome Res. 2008 Jan;7(1):96-103. doi: 10.1021/pr070244j. Epub 2007 Aug 21. J Proteome Res. 2008. PMID: 17711323 Free PMC article.
Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.
Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, Hussey P, Igra M, Maclean B, Lin CW, Detter A, Fang R, Faca V, Gafken P, Zhang H, Whiteaker J, States D, Hanash S, Paulovich A, McIntosh MW. Rauch A, et al. J Proteome Res. 2006 Jan;5(1):112-21. doi: 10.1021/pr0503533. J Proteome Res. 2006. PMID: 16396501
55 results