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The effect of a G:T mispair on the dynamics of DNA.
Imhof P, Zahran M. Imhof P, et al. Among authors: zahran m. PLoS One. 2013;8(1):e53305. doi: 10.1371/journal.pone.0053305. Epub 2013 Jan 15. PLoS One. 2013. PMID: 23335959 Free PMC article.
Effect of a U:G mispair on the water around DNA.
Mardt A, Gorriz RF, Ferraro F, Ulrich P, Zahran M, Imhof P. Mardt A, et al. Among authors: zahran m. Biophys Chem. 2022 Apr;283:106779. doi: 10.1016/j.bpc.2022.106779. Epub 2022 Feb 17. Biophys Chem. 2022. PMID: 35217480
RAG-3D: a search tool for RNA 3D substructures.
Zahran M, Sevim Bayrak C, Elmetwaly S, Schlick T. Zahran M, et al. Nucleic Acids Res. 2015 Oct 30;43(19):9474-88. doi: 10.1093/nar/gkv823. Epub 2015 Aug 24. Nucleic Acids Res. 2015. PMID: 26304547 Free PMC article.
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19.
Acharya A, Agarwal R, Baker MB, Baudry J, Bhowmik D, Boehm S, Byler KG, Chen SY, Coates L, Cooper CJ, Demerdash O, Daidone I, Eblen JD, Ellingson S, Forli S, Glaser J, Gumbart JC, Gunnels J, Hernandez O, Irle S, Kneller DW, Kovalevsky A, Larkin J, Lawrence TJ, LeGrand S, Liu SH, Mitchell JC, Park G, Parks JM, Pavlova A, Petridis L, Poole D, Pouchard L, Ramanathan A, Rogers DM, Santos-Martins D, Scheinberg A, Sedova A, Shen Y, Smith JC, Smith MD, Soto C, Tsaris A, Thavappiragasam M, Tillack AF, Vermaas JV, Vuong VQ, Yin J, Yoo S, Zahran M, Zanetti-Polzi L. Acharya A, et al. Among authors: zahran m. J Chem Inf Model. 2020 Dec 28;60(12):5832-5852. doi: 10.1021/acs.jcim.0c01010. Epub 2020 Dec 16. J Chem Inf Model. 2020. PMID: 33326239 Free PMC article.
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19.
Acharya A, Agarwal R, Baker M, Baudry J, Bhowmik D, Boehm S, Byler KG, Coates L, Chen SY, Cooper CJ, Demerdash O, Daidone I, Eblen JD, Ellingson S, Forli S, Glaser J, Gumbart JC, Gunnels J, Hernandez O, Irle S, Larkin J, Lawrence TJ, LeGrand S, Liu SH, Mitchell JC, Park G, Parks JM, Pavlova A, Petridis L, Poole D, Pouchard L, Ramanathan A, Rogers D, Santos-Martins D, Scheinberg A, Sedova A, Shen S, Smith JC, Smith MD, Soto C, Tsaris A, Thavappiragasam M, Tillack AF, Vermaas JV, Vuong VQ, Yin J, Yoo S, Zahran M, Zanetti-Polzi L. Acharya A, et al. Among authors: zahran m. ChemRxiv [Preprint]. 2020 Jul 29. doi: 10.26434/chemrxiv.12725465. ChemRxiv. 2020. Update in: J Chem Inf Model. 2020 Dec 28;60(12):5832-5852. doi: 10.1021/acs.jcim.0c01010 PMID: 33200117 Free PMC article. Updated. Preprint.
Predicting helical topologies in RNA junctions as tree graphs.
Laing C, Jung S, Kim N, Elmetwaly S, Zahran M, Schlick T. Laing C, et al. Among authors: zahran m. PLoS One. 2013 Aug 26;8(8):e71947. doi: 10.1371/journal.pone.0071947. eCollection 2013. PLoS One. 2013. PMID: 23991010 Free PMC article.
247 results