Barbe S - Search Results

1

A new framework for computational protein design through cost function network optimization.

Traoré S, Allouche D, André I, de Givry S, Katsirelos G, Schiex T, Barbe S. Traoré S, et al. Among authors: barbe s. Bioinformatics. 2013 Sep 1;29(17):2129-36. doi: 10.1093/bioinformatics/btt374. Epub 2013 Jul 10. Bioinformatics. 2013. PMID: 23842814

2

Guaranteed Discrete Energy Optimization on Large Protein Design Problems.

Simoncini D, Allouche D, de Givry S, Delmas C, Barbe S, Schiex T. Simoncini D, et al. Among authors: barbe s. J Chem Theory Comput. 2015 Dec 8;11(12):5980-9. doi: 10.1021/acs.jctc.5b00594. Epub 2015 Nov 25. J Chem Theory Comput. 2015. PMID: 26610100

3

Fast search algorithms for computational protein design.

Traoré S, Roberts KE, Allouche D, Donald BR, André I, Schiex T, Barbe S. Traoré S, et al. Among authors: barbe s. J Comput Chem. 2016 May 5;37(12):1048-58. doi: 10.1002/jcc.24290. Epub 2016 Feb 2. J Comput Chem. 2016. PMID: 26833706 Free PMC article.

4

Deterministic Search Methods for Computational Protein Design.

Traoré S, Allouche D, André I, Schiex T, Barbe S. Traoré S, et al. Among authors: barbe s. Methods Mol Biol. 2017;1529:107-123. doi: 10.1007/978-1-4939-6637-0_4. Methods Mol Biol. 2017. PMID: 27914047

5

Cost function network-based design of protein-protein interactions: predicting changes in binding affinity.

Viricel C, de Givry S, Schiex T, Barbe S. Viricel C, et al. Among authors: barbe s. Bioinformatics. 2018 Aug 1;34(15):2581-2589. doi: 10.1093/bioinformatics/bty092. Bioinformatics. 2018. PMID: 29474517

6

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems.

Charpentier A, Mignon D, Barbe S, Cortes J, Schiex T, Simonson T, Allouche D. Charpentier A, et al. Among authors: barbe s. J Chem Inf Model. 2019 Jan 28;59(1):127-136. doi: 10.1021/acs.jcim.8b00510. Epub 2018 Nov 14. J Chem Inf Model. 2019. PMID: 30380857

7

A structural homology approach for computational protein design with flexible backbone.

Simoncini D, Zhang KYJ, Schiex T, Barbe S. Simoncini D, et al. Among authors: barbe s. Bioinformatics. 2019 Jul 15;35(14):2418-2426. doi: 10.1093/bioinformatics/bty975. Bioinformatics. 2019. PMID: 30496341 Free article.

8

Positive multistate protein design.

Vucinic J, Simoncini D, Ruffini M, Barbe S, Schiex T. Vucinic J, et al. Among authors: barbe s. Bioinformatics. 2020 Jan 1;36(1):122-130. doi: 10.1093/bioinformatics/btz497. Bioinformatics. 2020. PMID: 31199465 Free article.

9

Protein Design with Deep Learning.

Defresne M, Barbe S, Schiex T. Defresne M, et al. Among authors: barbe s. Int J Mol Sci. 2021 Oct 29;22(21):11741. doi: 10.3390/ijms222111741. Int J Mol Sci. 2021. PMID: 34769173 Free PMC article. Review.

10

CAZyme discovery and design for sweet dreams.

André I, Potocki-Véronèse G, Barbe S, Moulis C, Remaud-Siméon M. André I, et al. Among authors: barbe s. Curr Opin Chem Biol. 2014 Apr;19:17-24. doi: 10.1016/j.cbpa.2013.11.014. Epub 2014 Jan 3. Curr Opin Chem Biol. 2014. PMID: 24780275 Review.

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