Pagnani A - Search Results

1

Modelling Competing Endogenous RNA Networks.

Bosia C, Pagnani A, Zecchina R. Bosia C, et al. Among authors: pagnani a. PLoS One. 2013 Jun 26;8(6):e66609. doi: 10.1371/journal.pone.0066609. Print 2013. PLoS One. 2013. PMID: 23840508 Free PMC article.

2

Coloring random graphs.

Mulet R, Pagnani A, Weigt M, Zecchina R. Mulet R, et al. Among authors: pagnani a. Phys Rev Lett. 2002 Dec 23;89(26):268701. doi: 10.1103/PhysRevLett.89.268701. Epub 2002 Dec 9. Phys Rev Lett. 2002. PMID: 12484862

3

Polynomial iterative algorithms for coloring and analyzing random graphs.

Braunstein A, Mulet R, Pagnani A, Weigt M, Zecchina R. Braunstein A, et al. Among authors: pagnani a. Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 2):036702. doi: 10.1103/PhysRevE.68.036702. Epub 2003 Sep 3. Phys Rev E Stat Nonlin Soft Matter Phys. 2003. PMID: 14524921

4

Core percolation and onset of complexity in boolean networks.

Correale L, Leone M, Pagnani A, Weigt M, Zecchina R. Correale L, et al. Among authors: pagnani a. Phys Rev Lett. 2006 Jan 13;96(1):018101. doi: 10.1103/PhysRevLett.96.018101. Epub 2006 Jan 4. Phys Rev Lett. 2006. PMID: 16486521

5

Propagation of external regulation and asynchronous dynamics in random Boolean networks.

Mahmoudi H, Pagnani A, Weigt M, Zecchina R. Mahmoudi H, et al. Among authors: pagnani a. Chaos. 2007 Jun;17(2):026109. doi: 10.1063/1.2742931. Chaos. 2007. PMID: 17614696

6

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R. Bailly-Bechet M, et al. Among authors: pagnani a. BMC Bioinformatics. 2010 Jun 29;11:355. doi: 10.1186/1471-2105-11-355. BMC Bioinformatics. 2010. PMID: 20587029 Free PMC article.

7

Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M. Morcos F, et al. Among authors: pagnani a. Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):E1293-301. doi: 10.1073/pnas.1111471108. Epub 2011 Nov 21. Proc Natl Acad Sci U S A. 2011. PMID: 22106262 Free PMC article.

8

Protein 3D structure computed from evolutionary sequence variation.

Marks DS, Colwell LJ, Sheridan R, Hopf TA, Pagnani A, Zecchina R, Sander C. Marks DS, et al. Among authors: pagnani a. PLoS One. 2011;6(12):e28766. doi: 10.1371/journal.pone.0028766. Epub 2011 Dec 7. PLoS One. 2011. PMID: 22163331 Free PMC article.

9

Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem.

Tuncbag N, Braunstein A, Pagnani A, Huang SS, Chayes J, Borgs C, Zecchina R, Fraenkel E. Tuncbag N, et al. Among authors: pagnani a. J Comput Biol. 2013 Feb;20(2):124-36. doi: 10.1089/cmb.2012.0092. J Comput Biol. 2013. PMID: 23383998 Free PMC article.

10

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments.

Ala U, Karreth FA, Bosia C, Pagnani A, Taulli R, Léopold V, Tay Y, Provero P, Zecchina R, Pandolfi PP. Ala U, et al. Among authors: pagnani a. Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7154-9. doi: 10.1073/pnas.1222509110. Epub 2013 Mar 27. Proc Natl Acad Sci U S A. 2013. PMID: 23536298 Free PMC article.

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