Kangas JD - Search Results

1

Determining the subcellular location of new proteins from microscope images using local features.

Coelho LP, Kangas JD, Naik AW, Osuna-Highley E, Glory-Afshar E, Fuhrman M, Simha R, Berget PB, Jarvik JW, Murphy RF. Coelho LP, et al. Among authors: kangas jd. Bioinformatics. 2013 Sep 15;29(18):2343-9. doi: 10.1093/bioinformatics/btt392. Epub 2013 Jul 8. Bioinformatics. 2013. PMID: 23836142 Free PMC article.

2

Automated image analysis for high-content screening and analysis.

Shariff A, Kangas J, Coelho LP, Quinn S, Murphy RF. Shariff A, et al. J Biomol Screen. 2010 Aug;15(7):726-34. doi: 10.1177/1087057110370894. Epub 2010 May 20. J Biomol Screen. 2010. PMID: 20488979 Review.

3

Efficient modeling and active learning discovery of biological responses.

Naik AW, Kangas JD, Langmead CJ, Murphy RF. Naik AW, et al. Among authors: kangas jd. PLoS One. 2013 Dec 17;8(12):e83996. doi: 10.1371/journal.pone.0083996. eCollection 2013. PLoS One. 2013. PMID: 24358322 Free PMC article.

4

Efficient discovery of responses of proteins to compounds using active learning.

Kangas JD, Naik AW, Murphy RF. Kangas JD, et al. BMC Bioinformatics. 2014 May 16;15:143. doi: 10.1186/1471-2105-15-143. BMC Bioinformatics. 2014. PMID: 24884564 Free PMC article.

5

Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature.

Ahmed A, Arnold A, Coelho LP, Kangas J, Sheikh AS, Xing E, Cohen W, Murphy RF. Ahmed A, et al. Web Semant. 2010 Jul 1;8(2-3):151-154. doi: 10.1016/j.websem.2010.04.002. Web Semant. 2010. PMID: 24991197 Free PMC article.

6

Active machine learning-driven experimentation to determine compound effects on protein patterns.

Naik AW, Kangas JD, Sullivan DP, Murphy RF. Naik AW, et al. Among authors: kangas jd. Elife. 2016 Feb 3;5:e10047. doi: 10.7554/eLife.10047. Elife. 2016. PMID: 26840049 Free PMC article.

7

A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts.

Johnson GR, Kangas JD, Dovzhenko A, Trojok R, Voigt K, Majarian TD, Palme K, Murphy RF. Johnson GR, et al. Among authors: kangas jd. Cytometry A. 2017 Apr;91(4):326-335. doi: 10.1002/cyto.a.23067. Epub 2017 Feb 28. Cytometry A. 2017. PMID: 28245335 Free PMC article.

8

Detecting anomalies from liquid transfer videos in automated laboratory setting.

Sarker NH, Hakim ZA, Dabouei A, Uddin MR, Freyberg Z, MacWilliams A, Kangas J, Xu M. Sarker NH, et al. Front Mol Biosci. 2023 May 4;10:1147514. doi: 10.3389/fmolb.2023.1147514. eCollection 2023. Front Mol Biosci. 2023. PMID: 37214339 Free PMC article.

9

Optimizing drug discovery by Investigative Toxicology: Current and future trends.

Beilmann M, Boonen H, Czich A, Dear G, Hewitt P, Mow T, Newham P, Oinonen T, Pognan F, Roth A, Valentin JP, Van Goethem F, Weaver RJ, Birk B, Boyer S, Caloni F, Chen AE, Corvi R, Cronin MTD, Daneshian M, Ewart LC, Fitzgerald RE, Hamilton GA, Hartung T, Kangas JD, Kramer NI, Leist M, Marx U, Polak S, Rovida C, Testai E, Van der Water B, Vulto P, Steger-Hartmann T. Beilmann M, et al. Among authors: kangas jd. ALTEX. 2019;36(2):289-313. doi: 10.14573/altex.1808181. Epub 2018 Dec 20. ALTEX. 2019. PMID: 30570669 Free article.

10

10 simple rules for teaching wet-lab experimentation to computational biology students, i.e., turning computer mice into lab rats.

Ayoob JC, Kangas JD. Ayoob JC, et al. Among authors: kangas jd. PLoS Comput Biol. 2020 Jun 4;16(6):e1007911. doi: 10.1371/journal.pcbi.1007911. eCollection 2020 Jun. PLoS Comput Biol. 2020. PMID: 32497035 Free PMC article. No abstract available.

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