Inagaki Y - Search Results

1

Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes.

Kamikawa R, Brown MW, Nishimura Y, Sako Y, Heiss AA, Yubuki N, Gawryluk R, Simpson AG, Roger AJ, Hashimoto T, Inagaki Y. Kamikawa R, et al. Among authors: inagaki y. BMC Evol Biol. 2013 Jun 26;13:131. doi: 10.1186/1471-2148-13-131. BMC Evol Biol. 2013. PMID: 23800323 Free PMC article.

2

Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity.

Inagaki Y, Blouin C, Doolittle WF, Roger AJ. Inagaki Y, et al. Nucleic Acids Res. 2002 Jan 15;30(2):532-44. doi: 10.1093/nar/30.2.532. Nucleic Acids Res. 2002. PMID: 11788716 Free PMC article.

3

Lateral transfer of an EF-1alpha gene: origin and evolution of the large subunit of ATP sulfurylase in eubacteria.

Inagaki Y, Doolittle WF, Baldauf SL, Roger AJ. Inagaki Y, et al. Curr Biol. 2002 Apr 30;12(9):772-6. doi: 10.1016/s0960-9822(02)00816-3. Curr Biol. 2002. PMID: 12007424 Free article.

4

Testing for differences in rates-across-sites distributions in phylogenetic subtrees.

Susko E, Inagaki Y, Field C, Holder ME, Roger AJ. Susko E, et al. Among authors: inagaki y. Mol Biol Evol. 2002 Sep;19(9):1514-23. doi: 10.1093/oxfordjournals.molbev.a004214. Mol Biol Evol. 2002. PMID: 12200479

5

Assessing functional divergence in EF-1alpha and its paralogs in eukaryotes and archaebacteria.

Inagaki Y, Blouin C, Susko E, Roger AJ. Inagaki Y, et al. Nucleic Acids Res. 2003 Jul 15;31(14):4227-37. doi: 10.1093/nar/gkg440. Nucleic Acids Res. 2003. PMID: 12853641 Free PMC article.

6

Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

Inagaki Y, Susko E, Fast NM, Roger AJ. Inagaki Y, et al. Mol Biol Evol. 2004 Jul;21(7):1340-9. doi: 10.1093/molbev/msh130. Epub 2004 Mar 19. Mol Biol Evol. 2004. PMID: 15034136

7

On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled.

Susko E, Inagaki Y, Roger AJ. Susko E, et al. Among authors: inagaki y. Mol Biol Evol. 2004 Sep;21(9):1629-42. doi: 10.1093/molbev/msh159. Epub 2004 May 21. Mol Biol Evol. 2004. PMID: 15155796

8

Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study.

Inagaki Y, Simpson A, Dacks J, Roger A. Inagaki Y, et al. Syst Biol. 2004 Aug;53(4):582-93. doi: 10.1080/10635150490468756. Syst Biol. 2004. PMID: 15371248

9

Capsaspora owczarzaki is an independent opisthokont lineage.

Ruiz-Trillo I, Inagaki Y, Davis LA, Sperstad S, Landfald B, Roger AJ. Ruiz-Trillo I, et al. Among authors: inagaki y. Curr Biol. 2004 Nov 23;14(22):R946-7. doi: 10.1016/j.cub.2004.10.037. Curr Biol. 2004. PMID: 15556849 Free article. No abstract available.

10

Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes.

Simpson AG, Inagaki Y, Roger AJ. Simpson AG, et al. Among authors: inagaki y. Mol Biol Evol. 2006 Mar;23(3):615-25. doi: 10.1093/molbev/msj068. Epub 2005 Nov 24. Mol Biol Evol. 2006. PMID: 16308337

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