Ideker T - Search Results

1

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis.

Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, Ideker T, Ren B, Bar-Joseph Z, Hughes TR, Ecker JR. Chang KN, et al. Among authors: ideker t. Elife. 2013 Jun 11;2:e00675. doi: 10.7554/eLife.00675. Elife. 2013. PMID: 23795294 Free PMC article.

2

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering.

Kuo D, Tan K, Zinman G, Ravasi T, Bar-Joseph Z, Ideker T. Kuo D, et al. Among authors: ideker t. Genome Biol. 2010;11(7):R77. doi: 10.1186/gb-2010-11-7-r77. Epub 2010 Jul 23. Genome Biol. 2010. PMID: 20653936 Free PMC article.

3

Coevolution within a transcriptional network by compensatory trans and cis mutations.

Kuo D, Licon K, Bandyopadhyay S, Chuang R, Luo C, Catalana J, Ravasi T, Tan K, Ideker T. Kuo D, et al. Among authors: ideker t. Genome Res. 2010 Dec;20(12):1672-8. doi: 10.1101/gr.111765.110. Epub 2010 Oct 26. Genome Res. 2010. PMID: 20978140 Free PMC article.

4

Rewiring of genetic networks in response to DNA damage.

Bandyopadhyay S, Mehta M, Kuo D, Sung MK, Chuang R, Jaehnig EJ, Bodenmiller B, Licon K, Copeland W, Shales M, Fiedler D, Dutkowski J, Guénolé A, van Attikum H, Shokat KM, Kolodner RD, Huh WK, Aebersold R, Keogh MC, Krogan NJ, Ideker T. Bandyopadhyay S, et al. Among authors: ideker t. Science. 2010 Dec 3;330(6009):1385-9. doi: 10.1126/science.1195618. Science. 2010. PMID: 21127252 Free PMC article.

5

DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1.

Travesa A, Kuo D, de Bruin RA, Kalashnikova TI, Guaderrama M, Thai K, Aslanian A, Smolka MB, Yates JR 3rd, Ideker T, Wittenberg C. Travesa A, et al. Among authors: ideker t. EMBO J. 2012 Apr 4;31(7):1811-22. doi: 10.1038/emboj.2012.28. Epub 2012 Feb 14. EMBO J. 2012. PMID: 22333915 Free PMC article.

6

Checkpoint kinases regulate a global network of transcription factors in response to DNA damage.

Jaehnig EJ, Kuo D, Hombauer H, Ideker TG, Kolodner RD. Jaehnig EJ, et al. Cell Rep. 2013 Jul 11;4(1):174-88. doi: 10.1016/j.celrep.2013.05.041. Epub 2013 Jun 27. Cell Rep. 2013. PMID: 23810556 Free PMC article.

7

Evidence for a common evolutionary rate in metazoan transcriptional networks.

Carvunis AR, Wang T, Skola D, Yu A, Chen J, Kreisberg JF, Ideker T. Carvunis AR, et al. Among authors: ideker t. Elife. 2015 Dec 18;4:e11615. doi: 10.7554/eLife.11615. Elife. 2015. PMID: 26682651 Free PMC article.

8

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M. Reguly T, et al. Among authors: ideker t. J Biol. 2006;5(4):11. doi: 10.1186/jbiol36. Epub 2006 Jun 8. J Biol. 2006. PMID: 16762047 Free PMC article.

9

Transcriptional regulation of protein complexes within and across species.

Tan K, Shlomi T, Feizi H, Ideker T, Sharan R. Tan K, et al. Among authors: ideker t. Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1283-8. doi: 10.1073/pnas.0606914104. Epub 2007 Jan 16. Proc Natl Acad Sci U S A. 2007. PMID: 17227853 Free PMC article.

10

Dynamic reprogramming of transcription factors to and from the subtelomere.

Mak HC, Pillus L, Ideker T. Mak HC, et al. Among authors: ideker t. Genome Res. 2009 Jun;19(6):1014-25. doi: 10.1101/gr.084178.108. Epub 2009 Apr 16. Genome Res. 2009. PMID: 19372386 Free PMC article.

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