Bar-Joseph Z - Search Results

1

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis.

Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, Ideker T, Ren B, Bar-Joseph Z, Hughes TR, Ecker JR. Chang KN, et al. Elife. 2013 Jun 11;2:e00675. doi: 10.7554/eLife.00675. Elife. 2013. PMID: 23795294 Free PMC article.

2

A transcription factor hierarchy defines an environmental stress response network.

Song L, Huang SC, Wise A, Castanon R, Nery JR, Chen H, Watanabe M, Thomas J, Bar-Joseph Z, Ecker JR. Song L, et al. Science. 2016 Nov 4;354(6312):aag1550. doi: 10.1126/science.aag1550. Science. 2016. PMID: 27811239 Free PMC article.

3

Integrated multi-omics framework of the plant response to jasmonic acid.

Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, Ecker JR. Zander M, et al. Nat Plants. 2020 Mar;6(3):290-302. doi: 10.1038/s41477-020-0605-7. Epub 2020 Mar 13. Nat Plants. 2020. PMID: 32170290 Free PMC article.

4

Predicting tissue specific transcription factor binding sites.

Zhong S, He X, Bar-Joseph Z. Zhong S, et al. BMC Genomics. 2013 Nov 15;14:796. doi: 10.1186/1471-2164-14-796. BMC Genomics. 2013. PMID: 24238150 Free PMC article.

5

Publisher Correction: Integrated multi-omics framework of the plant response to jasmonic acid.

Zander M, Lewsey MG, Clark NM, Yin L, Bartlett A, Saldierna Guzmán JP, Hann E, Langford AE, Jow B, Wise A, Nery JR, Chen H, Bar-Joseph Z, Walley JW, Solano R, Ecker JR. Zander M, et al. Nat Plants. 2020 Aug;6(8):1065. doi: 10.1038/s41477-020-0743-y. Nat Plants. 2020. PMID: 32694625

6

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering.

Kuo D, Tan K, Zinman G, Ravasi T, Bar-Joseph Z, Ideker T. Kuo D, et al. Genome Biol. 2010;11(7):R77. doi: 10.1186/gb-2010-11-7-r77. Epub 2010 Jul 23. Genome Biol. 2010. PMID: 20653936 Free PMC article.

7

Biological interaction networks are conserved at the module level.

Zinman GE, Zhong S, Bar-Joseph Z. Zinman GE, et al. BMC Syst Biol. 2011 Aug 23;5:134. doi: 10.1186/1752-0509-5-134. BMC Syst Biol. 2011. PMID: 21861884 Free PMC article.

8

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.

Schulz MH, Devanny WE, Gitter A, Zhong S, Ernst J, Bar-Joseph Z. Schulz MH, et al. BMC Syst Biol. 2012 Aug 16;6:104. doi: 10.1186/1752-0509-6-104. BMC Syst Biol. 2012. PMID: 22897824 Free PMC article.

9

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA. Lee TI, et al. Science. 2002 Oct 25;298(5594):799-804. doi: 10.1126/science.1075090. Science. 2002. PMID: 12399584

10

DECOD: fast and accurate discriminative DNA motif finding.

Huggins P, Zhong S, Shiff I, Beckerman R, Laptenko O, Prives C, Schulz MH, Simon I, Bar-Joseph Z. Huggins P, et al. Bioinformatics. 2011 Sep 1;27(17):2361-7. doi: 10.1093/bioinformatics/btr412. Epub 2011 Jul 12. Bioinformatics. 2011. PMID: 21752801 Free PMC article.

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