Kooistra AJ - Search Results

1

A structural chemogenomics analysis of aminergic GPCRs: lessons for histamine receptor ligand design.

Kooistra AJ, Kuhne S, de Esch IJ, Leurs R, de Graaf C. Kooistra AJ, et al. Br J Pharmacol. 2013 Sep;170(1):101-26. doi: 10.1111/bph.12248. Br J Pharmacol. 2013. PMID: 23713847 Free PMC article.

2

A community Biased Signaling Atlas.

Caroli J, Mamyrbekov A, Harpsøe K, Gardizi S, Dörries L, Ghosh E, Hauser AS, Kooistra AJ, Gloriam DE. Caroli J, et al. Among authors: kooistra aj. Nat Chem Biol. 2023 May;19(5):531-535. doi: 10.1038/s41589-023-01292-8. Nat Chem Biol. 2023. PMID: 36973443 No abstract available.

3

GPCRdb in 2025: adding odorant receptors, data mapper, structure similarity search and models of physiological ligand complexes.

Herrera LPT, Andreassen SN, Caroli J, Rodríguez-Espigares I, Kermani AA, Keserű GM, Kooistra AJ, Pándy-Szekeres G, Gloriam DE. Herrera LPT, et al. Among authors: kooistra aj. Nucleic Acids Res. 2025 Jan 6;53(D1):D425-D435. doi: 10.1093/nar/gkae1065. Nucleic Acids Res. 2025. PMID: 39558158 Free PMC article.

4

Electron density fingerprints (EDprints): virtual screening using assembled information of electron density.

Kooistra AJ, Binsl TW, van Beek JH, de Graaf C, Heringa J. Kooistra AJ, et al. J Chem Inf Model. 2010 Oct 25;50(10):1772-80. doi: 10.1021/ci1002608. J Chem Inf Model. 2010. PMID: 20839826

5

Molecular determinants of ligand binding modes in the histamine H(4) receptor: linking ligand-based three-dimensional quantitative structure-activity relationship (3D-QSAR) models to in silico guided receptor mutagenesis studies.

Istyastono EP, Nijmeijer S, Lim HD, van de Stolpe A, Roumen L, Kooistra AJ, Vischer HF, de Esch IJ, Leurs R, de Graaf C. Istyastono EP, et al. Among authors: kooistra aj. J Med Chem. 2011 Dec 8;54(23):8136-47. doi: 10.1021/jm201042n. Epub 2011 Nov 7. J Med Chem. 2011. PMID: 22003888

6

Crystal structure-based virtual screening for fragment-like ligands of the human histamine H(1) receptor.

de Graaf C, Kooistra AJ, Vischer HF, Katritch V, Kuijer M, Shiroishi M, Iwata S, Shimamura T, Stevens RC, de Esch IJ, Leurs R. de Graaf C, et al. Among authors: kooistra aj. J Med Chem. 2011 Dec 8;54(23):8195-206. doi: 10.1021/jm2011589. Epub 2011 Nov 7. J Med Chem. 2011. PMID: 22007643 Free PMC article.

7

Identification of novel α7 nicotinic receptor ligands by in silico screening against the crystal structure of a chimeric α7 receptor ligand binding domain.

Akdemir A, Edink E, Thompson AJ, Lummis SC, Kooistra AJ, de Graaf C, de Esch IJ. Akdemir A, et al. Among authors: kooistra aj. Bioorg Med Chem. 2012 Oct 1;20(19):5992-6002. doi: 10.1016/j.bmc.2012.06.054. Epub 2012 Jul 11. Bioorg Med Chem. 2012. PMID: 22959526 Free PMC article.

8

Virtual fragment screening: discovery of histamine H3 receptor ligands using ligand-based and protein-based molecular fingerprints.

Sirci F, Istyastono EP, Vischer HF, Kooistra AJ, Nijmeijer S, Kuijer M, Wijtmans M, Mannhold R, Leurs R, de Esch IJ, de Graaf C. Sirci F, et al. Among authors: kooistra aj. J Chem Inf Model. 2012 Dec 21;52(12):3308-24. doi: 10.1021/ci3004094. Epub 2012 Dec 3. J Chem Inf Model. 2012. PMID: 23140085

9

Small and colorful stones make beautiful mosaics: fragment-based chemogenomics.

de Graaf C, Vischer HF, de Kloe GE, Kooistra AJ, Nijmeijer S, Kuijer M, Verheij MH, England PJ, van Muijlwijk-Koezen JE, Leurs R, de Esch IJ. de Graaf C, et al. Among authors: kooistra aj. Drug Discov Today. 2013 Apr;18(7-8):323-30. doi: 10.1016/j.drudis.2012.12.003. Epub 2012 Dec 22. Drug Discov Today. 2013. PMID: 23266367

10

From heptahelical bundle to hits from the Haystack: structure-based virtual screening for GPCR ligands.

Kooistra AJ, Roumen L, Leurs R, de Esch IJ, de Graaf C. Kooistra AJ, et al. Methods Enzymol. 2013;522:279-336. doi: 10.1016/B978-0-12-407865-9.00015-7. Methods Enzymol. 2013. PMID: 23374191 Review.

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