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The zebrafish reference genome sequence and its relationship to the human genome.
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, Muffato M, Collins JE, Humphray S, McLaren K, Matthews L, McLaren S, Sealy I, Caccamo M, Churcher C, Scott C, Barrett JC, Koch R, Rauch GJ, White S, Chow W, Kilian B, Quintais LT, Guerra-Assunção JA, Zhou Y, Gu Y, Yen J, Vogel JH, Eyre T, Redmond S, Banerjee R, Chi J, Fu B, Langley E, Maguire SF, Laird GK, Lloyd D, Kenyon E, Donaldson S, Sehra H, Almeida-King J, Loveland J, Trevanion S, Jones M, Quail M, Willey D, Hunt A, Burton J, Sims S, McLay K, Plumb B, Davis J, Clee C, Oliver K, Clark R, Riddle C, Elliot D, Threadgold G, Harden G, Ware D, Begum S, Mortimore B, Kerry G, Heath P, Phillimore B, Tracey A, Corby N, Dunn M, Johnson C, Wood J, Clark S, Pelan S, Griffiths G, Smith M, Glithero R, Howden P, Barker N, Lloyd C, Stevens C, Harley J, Holt K, Panagiotidis G, Lovell J, Beasley H, Henderson C, Gordon D, Auger K, Wright D, Collins J, Raisen C, Dyer L, Leung K, Robertson L, Ambridge K, Leongamornlert D, McGuire S, Gilderthorp R, Griffiths C, Manthravadi D, Nichol S, Barker G, Whitehead S, Kay M, Brown J, Murnane C, Gray E, Humphries M, Sycamore N, Barker D, Saunders D, Wallis J, Babbage A, Hammond S, Mashreghi-Mohamm… See abstract for full author list ➔ Howe K, et al. Among authors: ware d. Nature. 2013 Apr 25;496(7446):498-503. doi: 10.1038/nature12111. Epub 2013 Apr 17. Nature. 2013. PMID: 23594743 Free PMC article.
MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.
Cahn J, Regulski M, Lynn J, Ernst E, de Santis Alves C, Ramakrishnan S, Chougule K, Wei S, Lu Z, Xu X, Ramu U, Drenkow J, Kramer M, Seetharam A, Hufford MB, McCombie WR, Ware D, Jackson D, Schatz MC, Gingeras TR, Martienssen RA. Cahn J, et al. Among authors: ware d. Nat Commun. 2024 Dec 30;15(1):10854. doi: 10.1038/s41467-024-55195-w. Nat Commun. 2024. PMID: 39738013 Free PMC article.
Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research.
Kapoor M, Ventura ES, Walsh A, Sokolov A, George N, Kumari S, Provart NJ, Cole B, Libault M, Tickle T, Warren WC, Koltes JE, Papatheodorou I, Ware D, Harrison PW, Elsik C, Yordanova G, Burdett T, Tuggle CK. Kapoor M, et al. Among authors: ware d. Front Genet. 2024 Nov 29;15:1460351. doi: 10.3389/fgene.2024.1460351. eCollection 2024. Front Genet. 2024. PMID: 39678381 Free PMC article.
Correction: Double triage to identify poorly annotated genes in maize: The missing link in community curation.
Tello-Ruiz MK, Marco CF, Hsu FM, Khangura RS, Qiao P, Sapkota S, Stitzer MC, Wasikowski R, Wu H, Zhan J, Chougule K, Barone LM, Ghiban C, Muna D, Olson AC, Wang L, Ware D, Micklos DA. Tello-Ruiz MK, et al. Among authors: ware d. PLoS One. 2024 Nov 21;19(11):e0314495. doi: 10.1371/journal.pone.0314495. eCollection 2024. PLoS One. 2024. PMID: 39570866 Free PMC article.
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
Koren S, Bao Z, Guarracino A, Ou S, Goodwin S, Jenike KM, Lucas J, McNulty B, Park J, Rautiainen M, Rhie A, Roelofs D, Schneiders H, Vrijenhoek I, Nijbroek K, Nordesjo O, Nurk S, Vella M, Lawrence KR, Ware D, Schatz MC, Garrison E, Huang S, McCombie WR, Miga KH, Wittenberg AHJ, Phillippy AM. Koren S, et al. Among authors: ware d. Genome Res. 2024 Nov 20;34(11):1919-1930. doi: 10.1101/gr.279334.124. Genome Res. 2024. PMID: 39505490
Functional diversification within the heme-binding split-barrel family.
Grosjean N, Zhang L, Kumaran D, Xie M, Fahey A, Santiago K, Hu F, Regulski M, Blaby IK, Ware D, Blaby-Haas CE. Grosjean N, et al. Among authors: ware d. J Biol Chem. 2024 Nov;300(11):107888. doi: 10.1016/j.jbc.2024.107888. Epub 2024 Oct 11. J Biol Chem. 2024. PMID: 39395795 Free PMC article.
362 results