Kuyucak S - Search Results

1

Mechanism and energetics of ligand release in the aspartate transporter GltPh.

Heinzelmann G, Bastug T, Kuyucak S. Heinzelmann G, et al. Among authors: kuyucak s. J Phys Chem B. 2013 May 9;117(18):5486-96. doi: 10.1021/jp4010423. Epub 2013 May 1. J Phys Chem B. 2013. PMID: 23590433

2

Gramicidin A channel as a test ground for molecular dynamics force fields.

Allen TW, Baştuğ T, Kuyucak S, Chung SH. Allen TW, et al. Among authors: kuyucak s. Biophys J. 2003 Apr;84(4):2159-68. doi: 10.1016/S0006-3495(03)75022-X. Biophys J. 2003. PMID: 12668425 Free PMC article.

3

Role of the dielectric constants of membrane proteins and channel water in ion permeation.

Baştuğ T, Kuyucak S. Baştuğ T, et al. Among authors: kuyucak s. Biophys J. 2003 May;84(5):2871-82. doi: 10.1016/S0006-3495(03)70015-0. Biophys J. 2003. PMID: 12719220 Free PMC article.

4

Test of molecular dynamics force fields in gramicidin A.

Bastug T, Kuyucak S. Bastug T, et al. Among authors: kuyucak s. Eur Biophys J. 2005 Jul;34(5):377-82. doi: 10.1007/s00249-005-0463-2. Epub 2005 Feb 12. Eur Biophys J. 2005. PMID: 15711809

5

Role of protein flexibility in ion permeation: a case study in gramicidin A.

Baştuğ T, Gray-Weale A, Patra SM, Kuyucak S. Baştuğ T, et al. Among authors: kuyucak s. Biophys J. 2006 Apr 1;90(7):2285-96. doi: 10.1529/biophysj.105.073205. Epub 2006 Jan 13. Biophys J. 2006. PMID: 16415054 Free PMC article.

6

Energetics of ion permeation, rejection, binding, and block in gramicidin A from free energy simulations.

Baştuğ T, Kuyucak S. Baştuğ T, et al. Among authors: kuyucak s. Biophys J. 2006 Jun 1;90(11):3941-50. doi: 10.1529/biophysj.105.074633. Epub 2006 Mar 13. Biophys J. 2006. PMID: 16533834 Free PMC article.

7

Molecular dynamics simulations of gramicidin A in a lipid bilayer: from structure-function relations to force fields.

Baştuğ T, Patra SM, Kuyucak S. Baştuğ T, et al. Among authors: kuyucak s. Chem Phys Lipids. 2006 Jun;141(1-2):197-204. doi: 10.1016/j.chemphyslip.2006.02.012. Epub 2006 Mar 20. Chem Phys Lipids. 2006. PMID: 16600199

8

Molecular dynamics and continuum electrostatics studies of inactivation in the HERG potassium channel.

Kutteh R, Vandenberg JI, Kuyucak S. Kutteh R, et al. Among authors: kuyucak s. J Phys Chem B. 2007 Feb 8;111(5):1090-8. doi: 10.1021/jp066294d. J Phys Chem B. 2007. PMID: 17266262

9

Free energy simulations of single and double ion occupancy in gramicidin A.

Baştuğ T, Kuyucak S. Baştuğ T, et al. Among authors: kuyucak s. J Chem Phys. 2007 Mar 14;126(10):105103. doi: 10.1063/1.2710267. J Chem Phys. 2007. PMID: 17362089

10

Binding of organic cations to gramicidin A channel studied with AutoDock and molecular dynamics simulations.

Patra SM, Baştug T, Kuyucak S. Patra SM, et al. Among authors: kuyucak s. J Phys Chem B. 2007 Sep 27;111(38):11303-11. doi: 10.1021/jp074228l. Epub 2007 Sep 5. J Phys Chem B. 2007. PMID: 17784747

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