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An informatic pipeline for managing high-throughput screening experiments and analyzing data from stereochemically diverse libraries.
Mulrooney CA, Lahr DL, Quintin MJ, Youngsaye W, Moccia D, Asiedu JK, Mulligan EL, Akella LB, Marcaurelle LA, Montgomery P, Bittker JA, Clemons PA, Brudz S, Dandapani S, Duvall JR, Tolliday NJ, De Souza A. Mulrooney CA, et al. Among authors: de souza a. J Comput Aided Mol Des. 2013 May;27(5):455-68. doi: 10.1007/s10822-013-9641-y. Epub 2013 Apr 13. J Comput Aided Mol Des. 2013. PMID: 23585218 Free PMC article.
BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types.
Howe EA, de Souza A, Lahr DL, Chatwin S, Montgomery P, Alexander BR, Nguyen DT, Cruz Y, Stonich DA, Walzer G, Rose JT, Picard SC, Liu Z, Rose JN, Xiang X, Asiedu J, Durkin D, Levine J, Yang JJ, Schürer SC, Braisted JC, Southall N, Southern MR, Chung TD, Brudz S, Tanega C, Schreiber SL, Bittker JA, Guha R, Clemons PA. Howe EA, et al. Among authors: de souza a. Nucleic Acids Res. 2015 Jan;43(Database issue):D1163-70. doi: 10.1093/nar/gku1244. Epub 2014 Dec 4. Nucleic Acids Res. 2015. PMID: 25477388 Free PMC article.
An Overview of the Challenges in Designing, Integrating, and Delivering BARD: A Public Chemical-Biology Resource and Query Portal for Multiple Organizations, Locations, and Disciplines.
de Souza A, Bittker JA, Lahr DL, Brudz S, Chatwin S, Oprea TI, Waller A, Yang JJ, Southall N, Guha R, Schürer SC, Vempati UD, Southern MR, Dawson ES, Clemons PA, Chung TD. de Souza A, et al. J Biomol Screen. 2014 Jun;19(5):614-27. doi: 10.1177/1087057113517139. Epub 2014 Jan 17. J Biomol Screen. 2014. PMID: 24441647 Free PMC article. Review.
Advancing Biological Understanding and Therapeutics Discovery with Small-Molecule Probes.
Schreiber SL, Kotz JD, Li M, Aubé J, Austin CP, Reed JC, Rosen H, White EL, Sklar LA, Lindsley CW, Alexander BR, Bittker JA, Clemons PA, de Souza A, Foley MA, Palmer M, Shamji AF, Wawer MJ, McManus O, Wu M, Zou B, Yu H, Golden JE, Schoenen FJ, Simeonov A, Jadhav A, Jackson MR, Pinkerton AB, Chung TD, Griffin PR, Cravatt BF, Hodder PS, Roush WR, Roberts E, Chung DH, Jonsson CB, Noah JW, Severson WE, Ananthan S, Edwards B, Oprea TI, Conn PJ, Hopkins CR, Wood MR, Stauffer SR, Emmitte KA; NIH Molecular Libraries Project Team. Schreiber SL, et al. Among authors: de souza a. Cell. 2015 Jun 4;161(6):1252-65. doi: 10.1016/j.cell.2015.05.023. Cell. 2015. PMID: 26046436 Free PMC article. Review.
Master data management: getting your house in order.
Seiler KP, Bodycombe NE, Hawkins T, Shell R, Lemon A, de Souza A, Clemons PA. Seiler KP, et al. Among authors: de souza a. Comb Chem High Throughput Screen. 2011 Nov;14(9):749-56. doi: 10.2174/138620711796957189. Comb Chem High Throughput Screen. 2011. PMID: 21631416
In Reply: High Fatality Rates in Pediatric Multisystem Inflammatory Syndrome: A Multicenter Experience From the Epicenter of Brazil's Coronavirus Pandemic.
Campos LR, Fonseca AR, Oliveira TB, Lino K, Paes Leme FV, Malheiros Torbey AF, de Souza ALAAG, Goldenzon AV, Araújo E Silva AE, Bulkool DP, de Freitas IR, Felix Rodrigues MC, Silva RM, Vasti MDSR, Araújo da Silva AR, Leal IA, Brandão LR, Sztajnbok FR, Land MGP. Campos LR, et al. Among authors: de souza alaag. Pediatr Infect Dis J. 2025 Jan 1;44(1):e31-e32. doi: 10.1097/INF.0000000000004522. Epub 2024 Aug 15. Pediatr Infect Dis J. 2025. PMID: 39705407 No abstract available.
Bone Tissue Engineering With Chitosan, Carbon Nanotubes, and Hydroxyapatite Biomaterials Enriched With Mesenchymal Stem Cells: A Radiographic and Histological Evaluation in a Sheep Model Undergoing Ostectomy (Bone Tissue Engineering in a Sheep Model).
de Moraes Marcondes G, Paretsis NF, da Silva DCB, de Souza AF, Rego MAF, da Silva GCM, Fülber J, Corrêa L, Friedrichsdorf SP, de Guzzi Plepis AM, da Conceição Amaro Martins V, Cortopassi SRG, do Valle De Zoppa AL. de Moraes Marcondes G, et al. Among authors: de souza af. J Biomed Mater Res B Appl Biomater. 2025 Jan;113(1):e35523. doi: 10.1002/jbm.b.35523. J Biomed Mater Res B Appl Biomater. 2025. PMID: 39704030
2,422 results