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The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.
Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, Amores A, Braasch I, Chalopin D, Volff JN, Lesch KP, Bisazza A, Minx P, Hillier L, Wilson RK, Fuerstenberg S, Boore J, Searle S, Postlethwait JH, Warren WC. Schartl M, et al. Among authors: shen y. Nat Genet. 2013 May;45(5):567-72. doi: 10.1038/ng.2604. Epub 2013 Mar 31. Nat Genet. 2013. PMID: 23542700 Free PMC article.
Whole Body Melanoma Transcriptome Response in Medaka.
Schartl M, Shen Y, Maurus K, Walter R, Tomlinson C, Wilson RK, Postlethwait J, Warren WC. Schartl M, et al. Among authors: shen y. PLoS One. 2015 Dec 29;10(12):e0143057. doi: 10.1371/journal.pone.0143057. eCollection 2015. PLoS One. 2015. PMID: 26714172 Free PMC article.
Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids.
Shen Y, Catchen J, Garcia T, Amores A, Beldorth I, Wagner J, Zhang Z, Postlethwait J, Warren W, Schartl M, Walter RB. Shen Y, et al. Comp Biochem Physiol C Toxicol Pharmacol. 2012 Jan;155(1):102-8. doi: 10.1016/j.cbpc.2011.03.012. Epub 2011 Apr 3. Comp Biochem Physiol C Toxicol Pharmacol. 2012. PMID: 21466860 Free PMC article.
UVB-induced gene expression in the skin of Xiphophorus maculatus Jp 163 B.
Yang K, Boswell M, Walter DJ, Downs KP, Gaston-Pravia K, Garcia T, Shen Y, Mitchell DL, Walter RB. Yang K, et al. Among authors: shen y. Comp Biochem Physiol C Toxicol Pharmacol. 2014 Jun;163:86-94. doi: 10.1016/j.cbpc.2014.01.008. Epub 2014 Feb 17. Comp Biochem Physiol C Toxicol Pharmacol. 2014. PMID: 24556253 Free PMC article.
Characterization of telomeres and telomerase expression in Xiphophorus.
Downs KP, Shen Y, Pasquali A, Beldorth I, Savage M, Gallier K, Garcia T, Booth RE, Walter RB. Downs KP, et al. Among authors: shen y. Comp Biochem Physiol C Toxicol Pharmacol. 2012 Jan;155(1):89-94. doi: 10.1016/j.cbpc.2011.05.005. Epub 2011 May 18. Comp Biochem Physiol C Toxicol Pharmacol. 2012. PMID: 21619941 Free PMC article.
Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources.
Shen Y, Garcia T, Pabuwal V, Boswell M, Pasquali A, Beldorth I, Warren W, Schartl M, Cresko WA, Walter RB. Shen Y, et al. Comp Biochem Physiol Part D Genomics Proteomics. 2013 Mar;8(1):11-6. doi: 10.1016/j.cbd.2012.10.006. Epub 2012 Nov 9. Comp Biochem Physiol Part D Genomics Proteomics. 2013. PMID: 23201534 Free PMC article.
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