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Discovering microRNAs from deep sequencing data using miRDeep.
Friedländer MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N. Friedländer MR, et al. Among authors: chen w. Nat Biotechnol. 2008 Apr;26(4):407-15. doi: 10.1038/nbt1394. Nat Biotechnol. 2008. PMID: 18392026
A human snoRNA with microRNA-like functions.
Ender C, Krek A, Friedländer MR, Beitzinger M, Weinmann L, Chen W, Pfeffer S, Rajewsky N, Meister G. Ender C, et al. Among authors: chen w. Mol Cell. 2008 Nov 21;32(4):519-28. doi: 10.1016/j.molcel.2008.10.017. Mol Cell. 2008. PMID: 19026782 Free article.
Comparative analysis of transposable element vector systems in human cells.
Grabundzija I, Irgang M, Mátés L, Belay E, Matrai J, Gogol-Döring A, Kawakami K, Chen W, Ruiz P, Chuah MK, VandenDriessche T, Izsvák Z, Ivics Z. Grabundzija I, et al. Among authors: chen w. Mol Ther. 2010 Jun;18(6):1200-9. doi: 10.1038/mt.2010.47. Epub 2010 Apr 6. Mol Ther. 2010. PMID: 20372108 Free PMC article.
Deciphering the porcine intestinal microRNA transcriptome.
Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R. Sharbati S, et al. Among authors: chen w. BMC Genomics. 2010 Apr 30;11:275. doi: 10.1186/1471-2164-11-275. BMC Genomics. 2010. PMID: 20433717 Free PMC article.
Comprehensive survey of human brain microRNA by deep sequencing.
Shao NY, Hu HY, Yan Z, Xu Y, Hu H, Menzel C, Li N, Chen W, Khaitovich P. Shao NY, et al. Among authors: chen w. BMC Genomics. 2010 Jun 30;11:409. doi: 10.1186/1471-2164-11-409. BMC Genomics. 2010. PMID: 20591156 Free PMC article.
De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.
Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W. Adamidi C, et al. Among authors: chen w. Genome Res. 2011 Jul;21(7):1193-200. doi: 10.1101/gr.113779.110. Epub 2011 May 2. Genome Res. 2011. PMID: 21536722 Free PMC article.
Widespread expression of piRNA-like molecules in somatic tissues.
Yan Z, Hu HY, Jiang X, Maierhofer V, Neb E, He L, Hu Y, Hu H, Li N, Chen W, Khaitovich P. Yan Z, et al. Among authors: chen w. Nucleic Acids Res. 2011 Aug;39(15):6596-607. doi: 10.1093/nar/gkr298. Epub 2011 May 5. Nucleic Acids Res. 2011. PMID: 21546553 Free PMC article.
Global quantification of mammalian gene expression control.
Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M. Schwanhäusser B, et al. Among authors: chen w. Nature. 2011 May 19;473(7347):337-42. doi: 10.1038/nature10098. Nature. 2011. PMID: 21593866
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