De Smet R - Search Results

1

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants.

De Smet R, Adams KL, Vandepoele K, Van Montagu MC, Maere S, Van de Peer Y. De Smet R, et al. Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2898-903. doi: 10.1073/pnas.1300127110. Epub 2013 Feb 4. Proc Natl Acad Sci U S A. 2013. PMID: 23382190 Free PMC article.

2

Redundancy and rewiring of genetic networks following genome-wide duplication events.

De Smet R, Van de Peer Y. De Smet R, et al. Curr Opin Plant Biol. 2012 Apr;15(2):168-76. doi: 10.1016/j.pbi.2012.01.003. Epub 2012 Feb 2. Curr Opin Plant Biol. 2012. PMID: 22305522 Review.

3

Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.

Li Z, Defoort J, Tasdighian S, Maere S, Van de Peer Y, De Smet R. Li Z, et al. Among authors: de smet r. Plant Cell. 2016 Feb;28(2):326-44. doi: 10.1105/tpc.15.00877. Epub 2016 Jan 7. Plant Cell. 2016. PMID: 26744215 Free PMC article.

4

Coordinated Functional Divergence of Genes after Genome Duplication in Arabidopsis thaliana.

De Smet R, Sabaghian E, Li Z, Saeys Y, Van de Peer Y. De Smet R, et al. Plant Cell. 2017 Nov;29(11):2786-2800. doi: 10.1105/tpc.17.00531. Epub 2017 Oct 25. Plant Cell. 2017. PMID: 29070508 Free PMC article.

5

Reverse-engineering transcriptional modules from gene expression data.

Michoel T, De Smet R, Joshi A, Marchal K, Van de Peer Y. Michoel T, et al. Among authors: de smet r. Ann N Y Acad Sci. 2009 Mar;1158:36-43. doi: 10.1111/j.1749-6632.2008.03943.x. Ann N Y Acad Sci. 2009. PMID: 19348630

6

Module networks revisited: computational assessment and prioritization of model predictions.

Joshi A, De Smet R, Marchal K, Van de Peer Y, Michoel T. Joshi A, et al. Among authors: de smet r. Bioinformatics. 2009 Feb 15;25(4):490-6. doi: 10.1093/bioinformatics/btn658. Epub 2009 Jan 9. Bioinformatics. 2009. PMID: 19136553

7

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks.

Michoel T, De Smet R, Joshi A, Van de Peer Y, Marchal K. Michoel T, et al. Among authors: de smet r. BMC Syst Biol. 2009 May 7;3:49. doi: 10.1186/1752-0509-3-49. BMC Syst Biol. 2009. PMID: 19422680 Free PMC article.

8

Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution.

Causier B, Li Z, De Smet R, Lloyd JPB, Van de Peer Y, Davies B. Causier B, et al. Among authors: de smet r. Sci Rep. 2017 Nov 30;7(1):16692. doi: 10.1038/s41598-017-16942-w. Sci Rep. 2017. PMID: 29192227 Free PMC article.

9

Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.

Kerchev P, Waszczak C, Lewandowska A, Willems P, Shapiguzov A, Li Z, Alseekh S, Mühlenbock P, Hoeberichts FA, Huang J, Van Der Kelen K, Kangasjärvi J, Fernie AR, De Smet R, Van de Peer Y, Messens J, Van Breusegem F. Kerchev P, et al. Among authors: de smet r. Plant Physiol. 2016 Jul;171(3):1704-19. doi: 10.1104/pp.16.00359. Epub 2016 May 25. Plant Physiol. 2016. PMID: 27225899 Free PMC article.

10

An ensemble biclustering approach for querying gene expression compendia with experimental lists.

De Smet R, Marchal K. De Smet R, et al. Bioinformatics. 2011 Jul 15;27(14):1948-56. doi: 10.1093/bioinformatics/btr307. Epub 2011 May 18. Bioinformatics. 2011. PMID: 21593133

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