Buchan DW - Search Results

1

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.

Lewis TE, Sillitoe I, Andreeva A, Blundell TL, Buchan DW, Chothia C, Cuff A, Dana JM, Filippis I, Gough J, Hunter S, Jones DT, Kelley LA, Kleywegt GJ, Minneci F, Mitchell A, Murzin AG, Ochoa-Montaño B, Rackham OJ, Smith J, Sternberg MJ, Velankar S, Yeats C, Orengo C. Lewis TE, et al. Among authors: buchan dw. Nucleic Acids Res. 2013 Jan;41(Database issue):D499-507. doi: 10.1093/nar/gks1266. Epub 2012 Nov 30. Nucleic Acids Res. 2013. PMID: 23203986 Free PMC article.

2

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA. Pearl FM, et al. Among authors: buchan dw. Nucleic Acids Res. 2001 Jan 1;29(1):223-7. doi: 10.1093/nar/29.1.223. Nucleic Acids Res. 2001. PMID: 11125098 Free PMC article.

3

The CATH protein family database: a resource for structural and functional annotation of genomes.

Orengo CA, Bray JE, Buchan DW, Harrison A, Lee D, Pearl FM, Sillitoe I, Todd AE, Thornton JM. Orengo CA, et al. Among authors: buchan dw. Proteomics. 2002 Jan;2(1):11-21. Proteomics. 2002. PMID: 11788987 Review.

4

The CATH extended protein-family database: providing structural annotations for genome sequences.

Pearl FM, Lee D, Bray JE, Buchan DW, Shepherd AJ, Orengo CA. Pearl FM, et al. Among authors: buchan dw. Protein Sci. 2002 Feb;11(2):233-44. doi: 10.1110/ps.16802. Protein Sci. 2002. PMID: 11790833 Free PMC article.

5

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.

Buchan DW, Shepherd AJ, Lee D, Pearl FM, Rison SC, Thornton JM, Orengo CA. Buchan DW, et al. Genome Res. 2002 Mar;12(3):503-14. doi: 10.1101/gr.213802. Genome Res. 2002. PMID: 11875040 Free PMC article.

6

Gene3D: structural assignments for the biologist and bioinformaticist alike.

Buchan DW, Rison SC, Bray JE, Lee D, Pearl F, Thornton JM, Orengo CA. Buchan DW, et al. Nucleic Acids Res. 2003 Jan 1;31(1):469-73. doi: 10.1093/nar/gkg051. Nucleic Acids Res. 2003. PMID: 12520054 Free PMC article.

7

A structural perspective on genome evolution.

Lee D, Grant A, Buchan D, Orengo C. Lee D, et al. Curr Opin Struct Biol. 2003 Jun;13(3):359-69. doi: 10.1016/s0959-440x(03)00079-4. Curr Opin Struct Biol. 2003. PMID: 12831888 Review.

8

Evolution of protein superfamilies and bacterial genome size.

Ranea JA, Buchan DW, Thornton JM, Orengo CA. Ranea JA, et al. Among authors: buchan dw. J Mol Biol. 2004 Feb 27;336(4):871-87. doi: 10.1016/j.jmb.2003.12.044. J Mol Biol. 2004. PMID: 15095866

9

Protein annotation and modelling servers at University College London.

Buchan DW, Ward SM, Lobley AE, Nugent TC, Bryson K, Jones DT. Buchan DW, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W563-8. doi: 10.1093/nar/gkq427. Epub 2010 May 27. Nucleic Acids Res. 2010. PMID: 20507913 Free PMC article.

10

Predictions of hot spot residues at protein-protein interfaces using support vector machines.

Lise S, Buchan D, Pontil M, Jones DT. Lise S, et al. PLoS One. 2011 Feb 28;6(2):e16774. doi: 10.1371/journal.pone.0016774. PLoS One. 2011. PMID: 21386962 Free PMC article.

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