Irausquin SJ - Search Results

1

An artificial neural network approach to improving the correlation between protein energetics and the backbone structure.

Fawcett TM, Irausquin SJ, Simin M, Valafar H. Fawcett TM, et al. Among authors: irausquin sj. Proteomics. 2013 Jan;13(2):230-8. doi: 10.1002/pmic.201200330. Epub 2012 Dec 23. Proteomics. 2013. PMID: 23184572 Free PMC article.

2

Dynafold: a dynamic programming approach to protein backbone structure determination from minimal sets of Residual Dipolar Couplings.

Mukhopadhyay R, Irausquin S, Schmidt C, Valafar H. Mukhopadhyay R, et al. J Bioinform Comput Biol. 2014 Feb;12(1):1450002. doi: 10.1142/S0219720014500024. Epub 2014 Jan 7. J Bioinform Comput Biol. 2014. PMID: 24467760 Free PMC article.

3

Improvements to REDCRAFT: a software tool for simultaneous characterization of protein backbone structure and dynamics from residual dipolar couplings.

Simin M, Irausquin S, Cole CA, Valafar H. Simin M, et al. J Biomol NMR. 2014 Dec;60(4):241-64. doi: 10.1007/s10858-014-9871-x. Epub 2014 Nov 18. J Biomol NMR. 2014. PMID: 25403759

4

Advances in the REDCAT software package.

Schmidt C, Irausquin SJ, Valafar H. Schmidt C, et al. Among authors: irausquin sj. BMC Bioinformatics. 2013 Oct 7;14:302. doi: 10.1186/1471-2105-14-302. BMC Bioinformatics. 2013. PMID: 24098943 Free PMC article.

5

Prediction of lipid-interacting amino acid residues from sequence features.

Wang L, Irausquin SJ, Yang JY. Wang L, et al. Among authors: irausquin sj. Int J Comput Biol Drug Des. 2008;1(1):14-25. doi: 10.1504/ijcbdd.2008.018707. Int J Comput Biol Drug Des. 2008. PMID: 20054998

6

Distinctive pattern of sequence polymorphism in the NS3 protein of hepatitis C virus type 1b reflects conflicting evolutionary pressures.

Irausquin SJ, Hughes AL. Irausquin SJ, et al. J Gen Virol. 2008 Aug;89(Pt 8):1921-1929. doi: 10.1099/vir.0.2008/000992-0. J Gen Virol. 2008. PMID: 18632963 Free PMC article.

7

PolyAna: analyzing synonymous and nonsynonymous polymorphic sites.

Knapp EW, Irausquin SJ, Friedman R, Hughes AL. Knapp EW, et al. Among authors: irausquin sj. Conserv Genet Resour. 2011 Jul 1;3(3):429-431. doi: 10.1007/s12686-010-9372-5. Conserv Genet Resour. 2011. PMID: 21731595 Free PMC article.

8

Conflicting selection pressures target the NS3 protein in hepatitis C virus genotypes 1a and 1b.

Irausquin SJ, Hughes AL. Irausquin SJ, et al. Virus Res. 2010 Feb;147(2):202-7. doi: 10.1016/j.virusres.2009.11.001. Epub 2009 Nov 6. Virus Res. 2010. PMID: 19896990 Free PMC article.

9

Conflicting selection pressures on T-cell epitopes in HIV-1 subtype B.

Irausquin SJ, Hughes AL. Irausquin SJ, et al. Infect Genet Evol. 2011 Mar;11(2):483-8. doi: 10.1016/j.meegid.2010.12.011. Epub 2011 Jan 11. Infect Genet Evol. 2011. PMID: 21232634 Free PMC article.

10

The evolutionary biology of poxviruses.

Hughes AL, Irausquin S, Friedman R. Hughes AL, et al. Infect Genet Evol. 2010 Jan;10(1):50-9. doi: 10.1016/j.meegid.2009.10.001. Epub 2009 Oct 13. Infect Genet Evol. 2010. PMID: 19833230 Free PMC article. Review.

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