Shin H - Search Results

1

Intestinal master transcription factor CDX2 controls chromatin access for partner transcription factor binding.

Verzi MP, Shin H, San Roman AK, Liu XS, Shivdasani RA. Verzi MP, et al. Among authors: shin h. Mol Cell Biol. 2013 Jan;33(2):281-92. doi: 10.1128/MCB.01185-12. Epub 2012 Nov 5. Mol Cell Biol. 2013. PMID: 23129810 Free PMC article.

2

TCF4 and CDX2, major transcription factors for intestinal function, converge on the same cis-regulatory regions.

Verzi MP, Hatzis P, Sulahian R, Philips J, Schuijers J, Shin H, Freed E, Lynch JP, Dang DT, Brown M, Clevers H, Liu XS, Shivdasani RA. Verzi MP, et al. Among authors: shin h. Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15157-62. doi: 10.1073/pnas.1003822107. Epub 2010 Aug 9. Proc Natl Acad Sci U S A. 2010. PMID: 20696899 Free PMC article.

3

Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2.

Verzi MP, Shin H, He HH, Sulahian R, Meyer CA, Montgomery RK, Fleet JC, Brown M, Liu XS, Shivdasani RA. Verzi MP, et al. Among authors: shin h. Dev Cell. 2010 Nov 16;19(5):713-26. doi: 10.1016/j.devcel.2010.10.006. Dev Cell. 2010. PMID: 21074721 Free PMC article.

4

Essential and redundant functions of caudal family proteins in activating adult intestinal genes.

Verzi MP, Shin H, Ho LL, Liu XS, Shivdasani RA. Verzi MP, et al. Among authors: shin h. Mol Cell Biol. 2011 May;31(10):2026-39. doi: 10.1128/MCB.01250-10. Epub 2011 Mar 14. Mol Cell Biol. 2011. PMID: 21402776 Free PMC article.

5

Chromatin profiling reveals regulatory network shifts and a protective role for hepatocyte nuclear factor 4α during colitis.

Chahar S, Gandhi V, Yu S, Desai K, Cowper-Sal-lari R, Kim Y, Perekatt AO, Kumar N, Thackray JK, Musolf A, Kumar N, Hoffman A, Londono D, Vazquez BN, Serrano L, Shin H, Lupien M, Gao N, Verzi MP. Chahar S, et al. Among authors: shin h. Mol Cell Biol. 2014 Sep;34(17):3291-304. doi: 10.1128/MCB.00349-14. Epub 2014 Jun 30. Mol Cell Biol. 2014. PMID: 24980432 Free PMC article.

6

An integrative analysis reveals functional targets of GATA6 transcriptional regulation in gastric cancer.

Sulahian R, Casey F, Shen J, Qian ZR, Shin H, Ogino S, Weir BA, Vazquez F, Liu XS, Hahn WC, Bass AJ, Chan V, Shivdasani RA. Sulahian R, et al. Among authors: shin h. Oncogene. 2014 Dec 4;33(49):5637-48. doi: 10.1038/onc.2013.517. Epub 2013 Dec 9. Oncogene. 2014. PMID: 24317510 Free PMC article.

7

Nucleosome dynamics define transcriptional enhancers.

He HH, Meyer CA, Shin H, Bailey ST, Wei G, Wang Q, Zhang Y, Xu K, Ni M, Lupien M, Mieczkowski P, Lieb JD, Zhao K, Brown M, Liu XS. He HH, et al. Among authors: shin h. Nat Genet. 2010 Apr;42(4):343-7. doi: 10.1038/ng.545. Epub 2010 Mar 7. Nat Genet. 2010. PMID: 20208536 Free PMC article.

8

Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq.

Zhang Y, Shin H, Song JS, Lei Y, Liu XS. Zhang Y, et al. Among authors: shin h. BMC Genomics. 2008 Nov 13;9:537. doi: 10.1186/1471-2164-9-537. BMC Genomics. 2008. PMID: 19014516 Free PMC article.

9

Computational methodology for ChIP-seq analysis.

Shin H, Liu T, Duan X, Zhang Y, Liu XS. Shin H, et al. Quant Biol. 2013 Mar 1;1(1):54-70. doi: 10.1007/s40484-013-0006-2. Quant Biol. 2013. PMID: 25741452 Free PMC article.

10

CEAS: cis-regulatory element annotation system.

Shin H, Liu T, Manrai AK, Liu XS. Shin H, et al. Bioinformatics. 2009 Oct 1;25(19):2605-6. doi: 10.1093/bioinformatics/btp479. Epub 2009 Aug 18. Bioinformatics. 2009. PMID: 19689956

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