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Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.
Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA, Cherry MJ, D'Eustachio P, Finn R, Giglio M, Hirschman L, Kania R, Klimke W, Martin MJ, Karsch-Mizrachi I, Munoz-Torres M, Natale D, O'Donovan C, Ouellette F, Pruitt KD, Robinson-Rechavi M, Sansone SA, Schofield P, Sutton G, Van Auken K, Vasudevan S, Wu C, Young J, Mazumder R. Gaudet P, et al. Among authors: bateman a. Database (Oxford). 2012 Oct 29;2012:bas036. doi: 10.1093/database/bas036. Print 2012. Database (Oxford). 2012. PMID: 23110974 Free PMC article.
The PASTA domain: a beta-lactam-binding domain.
Yeats C, Finn RD, Bateman A. Yeats C, et al. Among authors: bateman a. Trends Biochem Sci. 2002 Sep;27(9):438. doi: 10.1016/s0968-0004(02)02164-3. Trends Biochem Sci. 2002. PMID: 12217513 Review.
Pfam 10 years on: 10,000 families and still growing.
Sammut SJ, Finn RD, Bateman A. Sammut SJ, et al. Among authors: bateman a. Brief Bioinform. 2008 May;9(3):210-9. doi: 10.1093/bib/bbn010. Epub 2008 Mar 15. Brief Bioinform. 2008. PMID: 18344544 Review.
Identifying protein domains with the Pfam database.
Finn R, Griffiths-Jones S, Bateman A. Finn R, et al. Among authors: bateman a. Curr Protoc Bioinformatics. 2003 May;Chapter 2:Unit 2.5. doi: 10.1002/0471250953.bi0205s01. Curr Protoc Bioinformatics. 2003. PMID: 18428696
Identifying protein domains with the Pfam database.
Coggill P, Finn RD, Bateman A. Coggill P, et al. Among authors: bateman a. Curr Protoc Bioinformatics. 2008 Sep;Chapter 2:2.5.1-2.5.17. doi: 10.1002/0471250953.bi0205s23. Curr Protoc Bioinformatics. 2008. PMID: 18819075
InterPro: the integrative protein signature database.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. Hunter S, et al. Among authors: bateman a. Nucleic Acids Res. 2009 Jan;37(Database issue):D211-5. doi: 10.1093/nar/gkn785. Epub 2008 Oct 21. Nucleic Acids Res. 2009. PMID: 18940856 Free PMC article.
DUFs: families in search of function.
Bateman A, Coggill P, Finn RD. Bateman A, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1148-52. doi: 10.1107/S1744309110001685. Epub 2010 Mar 5. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010. PMID: 20944204 Free PMC article.
942 results